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We need examples of the types of experiments and queries which are going to be executed against `data-refinery` data.
These examples should include the perspectives from bioinformaticist, bench re…
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Hello!
I tried now several times running "learnErrors" of DADA2 in R. Loading the package worked fine and every step described until that. It runs about an hour, gives as output "**5485896480 total…
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Hi, I have a question regarding CallDuplexConsensusReads. The Phred score for my 5 input samples (which are by the way using a targets and baits targeted sequencing kit, and have about 900 fold enrich…
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Full reindex on DEV to test out the round 5 efficiency updates from Karl's changes, but encounter hundreds of such errors:
```
[2024-06-22 07:00:07] ERROR in es_writer:95: Failed to write doc of u…
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I updated dorado from 0.3.4 to 0.4.3 because I wanted to demultiplex my samples which worked quite well but when I now try to basecall data in duplex mode the performance is so bad. Also basecalling i…
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Hi @edsu7
We would like to add a new "purpose of sequencing" value to the metadata schema.
The new value is:
"Chronic (prolonged) infection surveillance"
Thank you,
Molly
…
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There is good microelectronics group at my depatment. They saw our activities and asked if we need some ASIC development. They have some founding, tools and production possibilities. They have also [b…
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### Operating System
Windows 11
### Other Linux
_No response_
### Workflow Version
v2.6.1
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
v5.1.9
### CLI command run
_No…
irc47 updated
5 months ago
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Some TCGA studies have called TERT promoter mutation but we don't have that data in cBioPortal. This is likely because the mutations may not come from the standard exome sequencing pipeline but from a…
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Hi Shiquan!
I am trying to get many coverage for a BAM file. In Bamdst tool we can do this by specifying --cutoffdepth parameter, but I need to get all these coverage in a single coverage.report. Ho…