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Is the sequencing depth for the taxonomy dataset similar across sites? Has anyone normalized the 16S/18S data? thanks - Kelly
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Hi,
I get an error when reopening Nexus files saved with FigTree version 1.4.5-Pre.
Opening of Newick files is without problems but when saved as a Nexus file a full stop (.) is transformed into a c…
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Dear mantainers,
I'd like to use the biobakery workflow to perform my analysis on 16s data.
I'm currently using the Docker container ([https://hub.docker.com/r/biobakery/workflows](https://hub.docke…
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### Source information
Mangalib 1.4.102
### Source language
Russian
### Steps to reproduce
![S40707-22090614](https://github.com/keiyoushi/extensions-source/assets/36767025/0da55250-b548-44ab-90…
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With dictd from the commit c480a4c while building the package for OpenSUSE:
```
[ 16s] lex -t servscan.l > servscan.c
[ 16s] yacc -d servparse.y
[ 16s] mv y.tab.c servparse.c
[ 16s] …
mcepl updated
2 months ago
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Hello,
Thanks for this nice tool
I am trying to apply the method on 16S fastq. The taxonomy sequence for bacteria could be downloaded from NCBI however I don't understand
1- which .dmp file …
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Hi @mreppell,
I trust that you are well,
I'm looking into the possibility of using karp to get better species assignments for 16S. Am not sure that am using it for the right purpose, but after l…
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Secondary structure of some sequences may contains information for classification, but stable metric for secondary structure of sequences with mutation is a problem. Images processing deals with noisy…
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Goal: compare the performance (in terms of accuracy, speed, and RAM usage) of the MinDivLP approach, and a standard QIIME2 workflow.
- [x] Familiarize yourself with [QIIME2](https://qiime2.org/) an…
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I wired [this](https://a.aliexpress.com/cbEiCZeHH) P4-2121-64*32-16s-hl1 panel (I believe it has an ICN2028BP chipset) and ran the demo scripts both as a chained 32x32 and as a single 64x32 but didn'…