MicroB3-IS osd-analysis issues

MicroB3-IS / osd-analysis

Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data

Apache License 2.0

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issues

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Bump nokogiri from 1.16.2 to 1.16.5 in /docs

#52 dependabot[bot] closed 6 months ago
0
Bump nokogiri from 1.14.3 to 1.16.2 in /docs

#51 dependabot[bot] closed 9 months ago
0
Bump nokogiri from 1.13.10 to 1.14.3 in /docs

#50 dependabot[bot] closed 1 year ago
0
Bump nokogiri from 1.13.9 to 1.13.10 in /docs

#49 dependabot[bot] closed 1 year ago
0
Bump nokogiri from 1.13.6 to 1.13.9 in /docs

#48 dependabot[bot] closed 2 years ago
0
Bump tzinfo from 1.2.4 to 1.2.10 in /docs

#47 dependabot[bot] closed 2 years ago
0
Bump nokogiri from 1.13.4 to 1.13.6 in /docs

#46 dependabot[bot] closed 2 years ago
0
Bump nokogiri from 1.13.3 to 1.13.4 in /docs

#45 dependabot[bot] closed 2 years ago
0
Bump nokogiri from 1.12.5 to 1.13.3 in /docs

#44 dependabot[bot] closed 2 years ago
0
Bump ffi from 1.9.18 to 1.15.4 in /docs

#43 dependabot[bot] closed 3 years ago
0
Bump addressable from 2.5.2 to 2.8.0 in /docs

#42 dependabot[bot] closed 2 years ago
1
Bump nokogiri from 1.8.1 to 1.12.5 in /docs

#41 dependabot[bot] closed 3 years ago
0
Bump rubyzip from 1.2.1 to 2.3.2 in /docs

#40 dependabot[bot] closed 3 years ago
0
OSD 2015 Environmental Data?

#39 davislaundon opened 5 years ago
1
Raw fastq files for the Life Watch data set of 2014 (V4-V9) ?

#38 vaulot closed 5 years ago
2
Sequencing depth of OSD metagenomes

#37 KijanaDaudi opened 5 years ago
0
COORDINATES OSD2015

#36 maripa opened 5 years ago
3
Non active links to assembled contigs etc.

#35 mkarlik93 opened 6 years ago
1
Where are the data now?

#34 mkarlik93 closed 6 years ago
2
Links on OSD wiki are dead....

#33 vaulot closed 6 years ago
2
Migrate pre-processing scripts to git:

#32 renzok opened 6 years ago
0
Comparison of the different assemblers

#31 chochart closed 8 years ago
2
Calculation of the number of organisms

#30 BouchraChaouni opened 8 years ago
0
normalized 16S/18S?

#29 noaagoodwink opened 8 years ago
1
phylogenetic tree

#28 BouchraChaouni opened 8 years ago
0
Wrong cluster reference sequence in otu file

#27 ikostadi opened 8 years ago
3
Biological File Identifiers in Environmental Metadata

#26 yavorska closed 9 years ago
3
report the tool versions used for assembly

#25 renzok opened 9 years ago
0
Fix ENVO IDs in contextual data file

#24 pbuttigieg closed 9 years ago
4
Update R script for contextual data import and cross-check with MC's data

#23 pbuttigieg closed 9 years ago
5
OTU table 18S

#22 ramonmassana opened 9 years ago
5
SILVAngs report PDF for 16S/18S LGC has inconsistencies

#21 ikostadi closed 9 years ago
1
Provide 93% quality-filetered taoxnomy for MED exports

#20 ikostadi closed 9 years ago
2
make metagnomes workable dataset available

#19 renzok closed 9 years ago
0
Questions about metagnomic data at EMG compared to documentation

#18 renzok opened 9 years ago
19
elaborate on data delivery section of pre-processing documentation

#17 renzok opened 9 years ago
0
fix truncated osd2014_18s---ssu---otu_mapping.stats and osd2014_16s---ssu---otu_mapping.stats

#16 renzok closed 9 years ago
1
Bulk download of EBI-metagenomics processed files

#15 rec3141 opened 9 years ago
11
why OTU number in 18S data is very different between file osd2014_18s---ssu---otus and osd2014_18s_lgc_otu_by_sample

#14 svicario closed 9 years ago
5
publish documentation on sequence data pre-processing

#13 renzok closed 9 years ago
1
add mg-traits pfam table to owncloud

#12 renzok closed 6 years ago
0
submit australia data to ENA

#11 renzok closed 9 years ago
1
submit lifewatch data to ENA

#10 renzok closed 9 years ago
3
make SILVAngs analysis results for Australian samples available

#9 renzok closed 9 years ago
3
make SILVAngs analysis results for LifeWatch Italy samples available

#8 renzok closed 9 years ago
6
make mg assemblies available

#7 renzok closed 9 years ago
1
re-run mg-traits against newers silva db 119.1

#6 renzok opened 9 years ago
0
create tables with otu taxa mapping for LGC 16S/18S datasets

#5 renzok closed 9 years ago
1
make ancillary data form available

#4 renzok closed 9 years ago
3
Make silva-ngs analysis results for LGC data available

#3 renzok closed 9 years ago
2