-
Hi all, first of all great repo with good documentation. However, I couldn't get the raw text parser for AMR to work.
First bug I encountered was spacy_interface.py in the lemma_postprocess functi…
RikVN updated
4 years ago
-
## Description
When running the `2stem` model I get a lot of deprecation errors from `tensorflow` and `numpy`.
Please update the used APIs to follow the dependencies new APIs.
## Step to reprod…
-
The readme is much better than predictors, but I think if you come at it blind, it's a bit intimidating and also has a lot of info you don't need. How would you feel about this?
Master: [![Build …
-
Running wdmerger when compiled with CUDA on Summit shows non-determinism. If executed with
```
jsrun -n 1 -a 1 -c 1 -g 1 ./Castro3d.pgi.MPI.CUDA.ex inputs_collision amr.plot_files_output=1 amr.plot_…
-
Hello, @tseemann
I have bulit the DeepARGs from https://bitbucket.org/gusphdproj/deeparg-ss/src/master/database/ and it have nearly 12000 sequences.
I abricate my metegonome assembly ORFs file to c…
-
Hello,
I'm trying to run mykrobe installed via docker, following [these](https://github.com/iqbal-lab/Mykrobe-predictor/blob/master/docker_usage_readme.md) instructions. I realise that's the old my…
-
I'm running
~/install/ensembl-vep-release-96/vep -i cut_wbm_par5_fil_genes.vcf -o test.txt --species taeniopygia_guttata --cache --dir_cache ./ --force_overwrite --canonical --symbol --tab --everyth…
-
Hello:
When I run the Mastermind extension, it adds the comments to the output file in this way and does not add any mastermind information, but fills its columns with "-".
What is this error? How c…
-
Hello Offical:
Is there a plugin or parameter that can print out diseases caused by genes?
-
Running Python 2.7.11 I get the following error
```
INFO:root:Running AMR prediction with panels data/panels/tb-species-160330.fasta.gz, data/panels/tb-amr-walker_2015.fasta.gz
INFO:root:Running …