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I am trying to run ancombc2 with a phyloseq object with the formula I used in previous pipelines but I receive following error
"Error in model.matrix.formula(formula(paste0("~", fix_formula)), data…
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I encountered a problem with a code:
```
res.aldex
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**Bug Description**
ruuning ancombc on QIIME2-metagenomics-2024.5 on Linux.
Error: package or namespace load failed for ‘phyloseq’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load sha…
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I was reviewing the Snakemake file that shows which fields from each tool are being used for the differentials/p-values when I noticed something unexpected regarding the values used from corncob and m…
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Hello,
I am trying to analyze the humann output files to obtain the differentially abundant pathways in each group using aldex2_kw.
however I got this error
Error in aldex.clr.function(reads, con…
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Hello,
I'm running on the ANCOM-BC tutorial.
I got the error "**_could not find function "feature.table_pre_process_**".
Do I need any more installation of prerequisites?
I attached my code fi…
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Hi,
great that you are working on a q2 plugin for ANCOM-BC!
I know it is work in progress. Nevertheless, I gave it a quick try, but I felt kind of stuck with the metadata you are providing. It looks…
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Hello Frederick,
Thank you for creating ANCOM-BC!
I am running ANCOM-BC2 on a 16S marker-gene dataset, with the following commands:
out_pan = ancombc2(data = an_Pan, assay_name = "counts", …
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While running ANCOMBC::ancombc2, I get 'Warning: longer object length is not a multiple of shorter object length'. Firstly, I ignored it, but the results are very different compared to other tools, so…
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Thanks you for developing such a great software.
In our analysis , we observe structural zeros where in on group (e.g., healthy)
we have [0, 0, 0, 0, 0, 1, 0, 0] for the abundance of species X and…