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### Project Title: **Predicting Antibiotic Resistance Mechanisms with DeepChem**
### Project Description
Develop a deep learning model in the DeepChem framework to predict the mechanisms of antibi…
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The reference information is taken as SNP and the rest (G and N bases) are used as reference
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During the review of our proposal for anresis funding the discussion of what cut-off values are the best to use for antibiotic resistance has come up. This seems to be a very sensitive issue for some …
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I ran into validation errors that trace back to some bad sequence encodings in SEVAhub.
This doesn't seem like the right place to report them, but there is no other contact information listed.
The…
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Currently I cannot apply a filter if previous filters have removed all of this data from my subset.
We should change this to allow application of filters with no data remaining in the subset. The …
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Thank you for you provided such a convenient platform for other science researchers to carry out the analysis of antibiotic resistance genes in different samples, but I have some problems about the st…
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I share this issue in earnest:
Your YouTube Python tutorials are superb, and I am (almost) thoroughly enjoying them... except for a couple of things that have nothing to do with Python. One of the …
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Hi there,
I was giving TORMES a shot but ran into some issues.
I invoked TORMES as follows, on one single sample:
```
# Run TORMES
tormes --metadata samples_metadata.txt \
--output GENOME…
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ncbi, resfinder, card all use diff names
maybe use 3 letter codes? like FUS, KAN, VAN etc
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Hi everybody,
I am doing a functional metagenomic study. I did the annotation of protein sequences using HMMER against the Resfam database.
The question is how can I know that one of the predict…