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- think about how to write intro
- take notes on interesting/relevant papers
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I have generated KEGG KO annotation results (_woltka classify_) and pathway results (_woltka collapse_ on KO results), and finally pathway coverage results (_woltka coverage_ on KO results with KEGG `…
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Hi everybody,
I am doing a functional metagenomic study. I did the annotation of protein sequences using HMMER against the Resfam database.
The question is how can I know that one of the predict…
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Briefly comment on this issue why you are interested in this mini-project.
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As per the title, AMRFinderPlus is a nice tool for antimicrobial resistance detection, so it would be a good addition to the template.
There's already a previous service where it was used, called …
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Related to Issue #1, it might be possible that the best move a cancer could make would be to reverse a mutation, in reality meaning that a small subclone that didn't get mutation X becomes dominant. T…
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[We ignore the disaster in the antibiotics market at our peril](https://www.ft.com/content/4da1c6e4-603d-11e9-9300-0becfc937c37) Financial Times article on economics of Antibiotic Research.
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ncbi, resfinder, card all use diff names
maybe use 3 letter codes? like FUS, KAN, VAN etc
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`import wfdb`
`print(wfdb.get_record_list("antimicrobial-resistance-uti")) # The 7th database from get_dbs()`
Rather than returning a list of records, it returns a list of lines of a 403 Error HTM…
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Author: AlysY
Repo: https://github.com/menzies-hotspots/AMR-HOTspots
Aim: I have 2 main queries. How could I set up the structure of having multiple scripts to be clearer to other people? I haven't…
AlysY updated
2 years ago