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My error comes from step 8.1 from 'Full Manual', specifically I am getting the error
**
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Line 253:
```
plyranges::mutate(symbol = symbol[gene_id])
```
This line pops out error, seems that "gene_id" is not declared before this point.
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I have the ArchR project load into `proj`
```
getAvailableMatrices(proj)
[1] "GeneScoreMatrix" "PeakMatrix" "TileMatrix"
```
To get the peak matrix I used:
`peak_matrix peak_matrix
…
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Hi,
I wonder if the gene score in your data is what called **gene activity score** often generated using Signac.
Please help me confirm. Thank you!
Best
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`> var.tile.mtx
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Thank you very much for sharing. I would like to ask how you collected the motif pwm matrix through Danio-code. I am looking forward to your reply.
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Congratulations on the wonderful-looking update on VIA.
This is my first time trying to use VIA (or StaVia), and it seems like the tutorial for [scATAC-seq Hematopoiesis] link is not working corre…
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I can run subsetArchRProject successfully for every sample, but when I run for one sample, something wrong happend!
Command is:
archR_object = subsetArchRProject(ArchRProj = archR_object, outputDi…
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Hello
thank you for developping this nice package
I am trying to proceed with the installation on my mac but I am not able to .
```
devtools::install_github("GreenleafLab/ArchR", ref="master", r…
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When run the tutorial "https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html"
The output figures are all correct but when I tried to save them:
```{r}
#Save Plot
plotPDF(p1, p2, p3…