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ShobiStassen
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VIA
trajectory inference
https://pyvia.readthedocs.io/en/latest/
MIT License
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Update basic toy notebooks
#66
MinatoKobashi
closed
1 month ago
0
StaVia patch for new parameters
#65
MinatoKobashi
closed
2 months ago
0
timeseries/timelabel aided analysis
#64
TimmFH
closed
2 months ago
4
Minor fixes to plotting functions
#63
MinatoKobashi
closed
4 months ago
0
VIA function
#62
feasiblee
opened
4 months ago
2
Revert "Update plotting_via.py"
#61
ShobiStassen
closed
4 months ago
0
Update plotting_via.py
#60
MinatoKobashi
closed
4 months ago
0
API update 3
#59
MinatoKobashi
closed
4 months ago
0
API update 3
#58
MinatoKobashi
closed
4 months ago
0
ATAC tutorial
#57
revolvefire
opened
4 months ago
3
Revert "API update 3"
#56
ShobiStassen
closed
4 months ago
0
API update 3
#55
MinatoKobashi
closed
4 months ago
0
API update 2
#54
MinatoKobashi
closed
4 months ago
0
Revert "Updated API"
#53
ShobiStassen
closed
4 months ago
0
Updated API
#52
MinatoKobashi
closed
4 months ago
0
added rst and folders
#51
MinatoKobashi
closed
5 months ago
0
Updated Zebrahub tutorial nb
#50
MinatoKobashi
closed
5 months ago
0
Data type issues
#49
feasiblee
closed
5 months ago
2
Error when plotting differentiation.flow
#48
TJonCooper
closed
5 months ago
1
TypeError: __init__() got an unexpected keyword argument 'dist_std_local'
#47
HuangDDU
closed
8 months ago
4
TypeError: 'NoneType' object is not subscriptable
#46
realzehuali
closed
9 months ago
15
The result changes even though the random seed is fixed
#45
searchlie
closed
11 months ago
3
TypeError: plot_scatter() got an unexpected keyword argument 'categorical'
#44
searchlie
closed
11 months ago
5
FileNotFoundError in VIA(embedding_type='via-umap')
#43
searchlie
closed
11 months ago
3
Error in v0.run_VIA()
#42
yrushil
closed
1 year ago
2
Color scheme in via_streamplot
#41
barbareyex
closed
11 months ago
6
beginner problems?
#40
dxl3742
closed
11 months ago
3
plot_scatter() function problem
#39
barbareyex
closed
1 year ago
4
Where is the mESC_7000perDay_noscaling_meso.csv file for Time Series Mesoderm Tutorial?
#38
ylcheng
closed
1 year ago
10
terminal states/cell
#37
wangjiawen2013
closed
11 months ago
1
Cluster composition graph and influential genes in pseudo-time analysis
#36
nilesh-iiita
opened
1 year ago
1
IndexError: non-empty take from an empty axes
#35
Stefan-Stefan1
closed
9 months ago
2
Arrow, directionality, line, smoothness
#34
wangjiawen2013
opened
1 year ago
6
sum of lineage probability
#33
wangjiawen2013
opened
1 year ago
1
terminal cells
#32
wangjiawen2013
closed
1 year ago
1
streamplot error
#31
wangjiawen2013
closed
1 year ago
2
Pseudotime in the same cluster
#30
wangjiawen2013
opened
1 year ago
7
passing your own cluster labels: VIA performance with different clustering methods.
#29
barveaditya
opened
1 year ago
10
added the name of the author
#28
LeoKnaw
closed
1 year ago
1
pseudotime reproducibility
#27
wangjiawen2013
closed
1 year ago
28
clustering resolution
#26
wangjiawen2013
closed
1 year ago
6
specific gene trends
#25
wangjiawen2013
opened
1 year ago
8
root_user = None
#24
Stefan-Stefan1
closed
1 year ago
2
Two many nodes and edges
#23
wangjiawen2013
closed
1 year ago
5
new release and beautify
#22
wangjiawen2013
opened
1 year ago
16
string index out of range
#21
melancholy12
closed
1 year ago
5
Input preprocessing and normalization
#20
pavsol
opened
1 year ago
3
The pseudotime value is NAN
#19
storytc
closed
1 year ago
2
Importing VIA issue
#18
sidrahmaryam-cyber
closed
2 years ago
5
Tutorial for high dimensional cytometry data
#17
luglilab
opened
2 years ago
3
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