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Ran the following command to test installation:
`NXF_VER=20.07.1 /home/shared/nextflow run epidiverse/wgbs -profile test,docker`
The test fails in the following fashion:
```
[7f/7c58ce] proc…
kubu4 updated
2 years ago
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I encountered the following error when I test example data. Is there any solution to this error? Thanks.
[PEM-Q] primerChrom: chr15
[PEM-Q] primer_start: 61986633
[PEM-Q] primer_end: 61986652
[P…
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Hi,
I am using BWA to map my FASTQ file to the hg38 genome. However, when I run the 'stats' command, it consistently stops at the beginning and throws the error message mentioned in the issue title.
…
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```
Hello,
I am trying to calculate the mapping statistics of a BAM file. I am using
SAMtools 1.3.1 and am able to get statistics on the BAM file using samtools
flagstat. However, when I try sam…
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Hi everybody. I have used pysamstat to calculate some statistics on my bam file. I saw on IGV that in the region of interest of bam file, where I used pysamstats, I have a lot of supplementary alignm…
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Dear HiC-Pro Authors,
Thank you for your software. However, I encountered an error while running my own data:
Pairing of R1 and R2 tags ...
Logs: logs/Fuji/mergeSAM.log
Makefile:144: bowtie_pa…
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Hi, I'm using pbsim2 for my Thesis to test performance of aligning long reads tools, and I was searching a method to obtain sam file instead maf.(In the same way simlord do for instance). I've seen th…
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Dear author:
When i ran juli, i met some questions. the description is as follows:
command:
Rscript juli.fusion.R JuLI_test.bam test outdir 1 refdir hg19.fa
juli.fusion.R:
library(juliv0…
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Hi,
I'm using the latest 4.1.0 version and refstats works perfectly for a single bam input, but how does the --bam-in flag work for multiple bam files? I'm wanting to compute ks stat. I tried just …
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We (unintentionally) ran breakdancer twice on several sample tumor-normal pair using the same breakdancer version. The first run was 6 months ago and the second run was one month ago. We noticed that …