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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [scri…
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Buzzwords: containers, Docker, Singularity, dependency hell
Problem: Images are limited to having 10 GB installs. Generally this isn't a problem, but with tools that require databases to run (e.g. …
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Hello,
I I am running the pre-ma.bf script like so:
hyphy hyphy-analyses/codon-msa/pre-msa.bf --input combined_seq.fasta
I am running on a large memory node (1.5 Tb Memory) and get the followin…
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Hi Victor, I need some help with making a comut plot for these 10 genes -
RB1
NONO 0.520
RNF8 0.604
FAM75A6 0.607
ZNF385D 0.631
POP7 0.669
MYADM 0.695
ADCY10 0.803
NGLY1 0.830
HIST2H2AB 0.…
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pip pyproject.toml and setuptools dont work nicely together [yet](https://stackoverflow.com/questions/71517365/pyproject-toml-wont-find-project-name-with-setuptools-python-m-build-format).
I tried …
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Hi everyone,
I am having trouble using this pipeline apparently at the step of cutadapt.
For my analysis I submitted already trimmed fastq files, and so I left empty the adapters field in units.…
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Hi,
In my config-install.txt, the path is given to a custom python 3.7.9 installation:
PREFIX = /home/apa/hic/hicpro/install
BOWTIE2_PATH = /n/apps/CentOS7/install/bowtie2-2.4.2/bin/bowtie2
SA…
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Hi Yulia,
I can see that you have been working on a project to make a biological module in python.
I'm interested in collaborating in your project.
A little about me, I'm python developer, I'v…
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How shall I deploy ASAP2 using docker-compose and docker engine locally? Would there be any details?
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Hi,
I've tried to run the script(s) as described in the `README.md` but got stuck on the way. Please see my suggestions in [this](https://github.com/CSuperlei/DeepSV/pull/4) PR. The command-line in…