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## Overview
`mondo-ingest` utilizes SemanticSQL, which requires prefix maps in CSV form. We should create our own function in `mondolib` (unless Charlie thinks it's a good idea for this functionality…
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Current entry:
```yaml
- database: MEROPS
name: MEROPS peptidase database
generic_urls:
- https://www.ebi.ac.uk/merops/
entity_types:
- type_name: protein
type_id: PR:000…
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A lot of useful databases-as-ontologies here:
https://github.com/biopragmatics/obo-db-ingest
We may want to be conservative in loading some of these, ensuring there is agreement on URI expansion…
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This is a proposal for 1.6 to use the production rules from [SPARQL 1.1](https://www.w3.org/TR/2013/REC-sparql11-query-20130321/) to define prefixed identifiers.
Proposed rules:
```bnf
Prefixed-I…
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This is odd, as soon as I opened a new (unrelated) issue, GHA force pushed over one of my commits to the PR https://github.com/biopragmatics/bioregistry/pull/990 and then closed the PR:
![image](http…
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There is frequently a need to represent entities from a database as an ontology
See:
- [Limits of ontologies: How should databases be represented in OBO?](https://docs.google.com/presentation/d/…
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https://github.com/bioregistry/bioregistry/blob/main/docs/_data/bioregistry.jsonld could be incorporated into our prefix ingest.
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ClinicalTrials.gov updated their website ([announcement](https://nexus.od.nih.gov/all/2023/06/27/the-modernized-clinicaltrials-gov-website-is-here/)). I'm not sure whether the Zotero citation infrastr…
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Using the example file right from the docs, I get this error:
https://biopragmatics.github.io/curies.rs/use_javascript.html#-in-bare-html-files
```
web.js:883 Mixed Content: The page at 'https:…
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As per conventions and pubmed itself, pubmed IDs should be prefixed with PMID:
Example page with a PMID: https://pubmed.ncbi.nlm.nih.gov/35189623/
## Blocked By
- [x] https://github.com/b…