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Biosamples are normally from a tissue sample that can be named. This data should be represented as a named field of a Biosample message, i.e. `tissue_type`. I suppose one might use something like the …
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### Description of feature
Add COPO to the set of sources queried by the genome metadata subworkflow
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**Is your feature request related to a problem? Please describe.**
There was bug in the GOLD API and we are missing sample collection date for at least GROW, Bioscales, Lake Mendota, and AGFMA. For t…
aclum updated
1 month ago
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there's a note on the schema itself:
> `commented out `insdc_biosample_identifiers` `insdc_secondary_sample_identifiers`... need better understanding of id patterns (at least)`
- `insdc_biosampl…
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**Deliverable this task is associated with**
_See Deliverables tab here: https://docs.google.com/spreadsheets/d/1jF1RU_TwQlJpqvHnKk-KieE6VlUv0je4eFddK9idPuE/edit#gid=417989680
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**RACI**
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aclum updated
3 months ago
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Study, metadata, and biosamples submitted via NMDC submission portal
- [x] Ingest into mongo dev & test (https://github.com/microbiomedata/issues/issues/582 )
- [x] Ingest into mongo prod (https:…
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I have been contributing to MIxS for close to three years. I have not been able to find any documentation about the date on which each MIxS release was published.
I believe this is a standard opera…
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In the current draft description, `LabProtocol` has the properties `bioSample`, `sample`, `computationalTool`, `labEquipment`, `reagent`. `LabProcess` doesn't have any of these properties.
As far a…
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We want to make sure the example notebooks in this repo: https://github.com/microbiomedata/notebook_hackathons do not break with any changes or pushes to the NMDC-runtime API.
The following endpoi…
kheal updated
1 month ago
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When submitting to ENA, after submitting to BioSamples, samples are brokered again to BioSample, thus getting again an accession number as is shown in the screenshot.
![image](https://github.com/elix…