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I tried to run basic commands from README and [Documentation](https://cazy-webscraper.readthedocs.io/en/latest/pdb.html). As my primary goal is to retrieve the PDB files, I started creating a local da…
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Hello.
I am studying an organism that requires me to make an orgdb object. I followed the tutorial to do so with AnnotationForge using both my organism and the one it provides as an example, but wh…
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First I built the dabatase with:
`cazy_webscraper --classes AA`
Then I tried:
cw_get_uniprot_data --families AA17 -s
And I got this output:
```
Built output directory: .cazy_webscraper_…
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- [x] I checked and didn't found a related issue,e.g. while typing the title
- [x] ** I got an error in the following rule(s):**
- [x] I checked the log files indicated indicated in the…
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I'm not sure there actually is a microcode update, but Needrestart thinks there is. Rebooting does not make a difference. I believe this started either after a recent update to `linux-firmware` or af…
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- [x] I checked and didn't found a related issue,e.g. while typing the title
- [x] ** I got an error in the following rule(s):** ` `
- [x] I checked the log files indicated indicated in …
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## Describe the bug
When using `cw_get_uniprot_data` to retrieve data from UniProt, no data is retrieved and added to the local CAZyme database
## To Reproduce
1. Build a local CAZyme database:…
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Hello I was wondering if it is possible to use DRAM's distill annotations on annotations done outside of DRAM. I am working with soil metagenomes which 1) want to use reads that are >1kpb not just con…
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Please complete this report in full and as much detail as possible. It will help with getting the bug fixed far sooner!
## Describe the bug
While retrieving protein sequences from NCBI, if the Bio…
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Hello
I just installed DRAM with conda on a fresh miniconda3 install on two independent HPC's
After running the ```DRAM-setup.py prepare_databases --output_dir DRAM_data``` step, I get the foll…