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**User story**
As a user of the scRNA Core pipeline, I would like bed verification support for the transfer between the cDNA PCR plate and the cDNA PCR XP plate.
Notes:
- The plate purposes and …
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Hi, I notice that the block size in gpu-latency is 64 rather than 32 (warp size) or a single thread. Is there any consideration to set as 64? Looking forward to your reply:)
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The reference creation process breaks:
docker run -v /mnt/morris/defuse/:/data jeltje/defuse reference -c hg38config.txt
...
Input files DNA, FASTA:
/data/defuseData/defuse.cdna.fa
…
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**Description**
As PSD we need to understand whether the users will want to be able to bypass aggregation in the scenario where there are fewer source plates. See additional context for aggregation p…
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I used cDNA_MINES.py command and it gives me following error with command-
python /home/aclab/apps/MINES/cDNA_MINES.py --fraction_modified control.fraction_modified_reads.plus.wig.bed --coverage con…
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Process variant with this cdna:
`NM_015074.3:c.184-7_184-6del, NM_183416.3:c.184-7_184-6del`
Expected:
cDNA is `c.184-7_184-6del` in output
Observed:
cDNA is `c.184-7_184-6del, NM_183416.3`…
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the base of AAChange.refGene is inconsistent with Ref/Alt, how to interpret this?
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Thank you for creating such a useful tool! I am interested in analyzing RNA-seq data, sequenced with Nanopore's PromethION, using IRFinder-S. The raw fastq formatted data from Nanopore are stored as a…
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- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
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Copenhageni_Basecalled_Aug_16_2019_Direct-cDNA_NoPolyATail
Copenhageni_Basecalled_Aug_16_2019_Direct-cDNA_NoPolyATail_Qiagen
Copenhageni_Basecalled_Aug_16_2019_Direct-cDNA_PolyATail
Icterohaemorrha…