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- [x] NTR abnormal chromatin loop formation during meiotic prophase I
parent ~FYPO:0006759~ abnormal chromatin organization during meiotic cell cycle (new term FYPO:0007943)
NTR abnormal homologou…
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1. The annotation that were originally to meiotic chromosome alignment, but that we changed to telomere clustering, I reverted to alignment. I don't think telomere clustering is correct here, cluster…
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```
❯ inputfile=/home/minion/HiPore-C/Pore-C_test2/vdFAnnotation/Merge_Align_Fragment_RvdF.csv
❯ juice_matrix=/home/minion/HiPore-C/Pore-C_test2/vdFAnnotation/juice_matrix.txt
❯ python ./Scripts/Ge…
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I have a pgl file with over 1.5 million rows, pgltools merge is taking very long time to run.
Any way to speed it up?
Thanks for this useful tool!
Tommy
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Discussing with @hattrill
- [x] GO:0034587 piRNA metabolic process and GO:1990511 piRNA biosynthetic process seem to have been used interchangeably to mean 'piRNA processing' - we need to review …
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Hi,
Recently I decided to use this package to identify chromatin loops, and when I run this command ( python3 ./mustache/mustache/mustache.py -f ./mustache/data/chr21_5kb.RAWobserved -b ./mustache…
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Thanks for the Mustache tool. It's extremely fast and well written.
I have a following question: can I use Mustache with ChIA-PET experiments? I tried to run it on [CTCF-targeted ChIA-PET on GM1287…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/js2264/HiContactsData
Confirm the following by ed…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jianhong/ATACseqTFEA
Confirm the following by edi…
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Hi:
I am wondering whether chromosight can be used to detect chromatin loops based on restriction fragments level (1f, 2f, etc) HI-C matrix? Such as store Hi-C matrix in cooler format in restrict…