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Hi Uyen,
Many thanks again for implementing the "whitelisting" option! I would like to ask whether it would also be possible to implement an option to partition TreeShrink analyses by clade. In my …
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I'd like to pitch everything outside my clade of interest. In part, this is to reduce the db size (vrt currently clocks in at 12.6 GB).
Not a huge priority.
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**[Casey Trimm](https://github.com/c-trimm)** 8 months ago
Allow editors to set a default image for clades. This can be used to determine what image shows up in the cladogram when someone clicks on t…
i2xzy updated
5 years ago
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Follow up to #40
With the recent addition of the community H5 Nextclade datasets in https://github.com/nextstrain/nextclade_data/pull/196, it should now be possible to run Nextclade as part of ing…
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When trying to compile a maximum a posteriori tree in windows, Error: Clade not found! is produced in windows. I.e. following the command - mapTree(tt, "...").
Help would be appreciated.
Cheers,…
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Update the in-progress `make_round_config.R` script to create a new version of `tasks.config` that contains the a new round based on the latest list of clades in `auxiliary-data/modeled-clades`
Defin…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
As in title, this report is forward from https://github.com/nf-core/taxprofiler/issu…
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Hi @schultzm, this looks like a very useful tool and thank you for bringing this out. Do you know if this would also work for resolving polytomies in IQ-TREE or RAxML output files? From my quick testi…
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When I choose a node as root node with 3 taxa in the clade, highlight this clade makes an unexpected highlighting both this clade and next to the clade. Why?![Uploading 1704543792872.png…]()
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I have noticed that there is a difference in the correlation values produced by the `Foreground + Sisterlist -> foreground2TreeClades -> tree2PathsClades -> correlateWithBinaryPhenotype` pipeline and …