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Many thanks for this fantastic tool. My questions are not really an issue but more theoretical.
- I presume if one does not have labels from the original datasets to be integrated, one could choos…
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Hi,
I'm having difficulty clustering using profiles when following the instructions in the wiki. Specifically I'm referring to this section:
```
# extract consensus sequences from profiles
…
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There are several methods published that claim to find more stable cluster by evaluating different parameter combinations (aka consensus clustering). One example is [SC3S](https://github.com/hemberg-l…
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Hi!
I am having this issue when trying to run Cluster_Ensembles in a CentOs machine. I have already installed metis and apparently is running.
Do you know what can be giving the error?
```
…
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### Description
If inputs are missing for the process `FOODME2:REPORTING:HELPER_SAMPLE_REPORT` then piepline fails with following error messsage:
```
WARN: Input tuple does not match tuple declar…
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Hello,
I was following one of the tutorials for running cNMF on my own data set. My dataset has 78103 observations and on NAs or inf counts. To see if I could get the pipeline going I set the pa…
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Hello, During the rule_reformat_filter_clusters step, only 36% of the clusters are being written, and I am not sure why. I understand this is happening in parse_clusters.py but have not been able to i…
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Hi,
I wonder if there is an appropriate way to estimate the usage of GEPs in another dataset so that one can compare changes in usage in different conditions? For example, I estimate GEPs usage per…
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I am finding quite a lot of errors like these:
out of range errors:
```
terminate called after throwing an instance of 'std::out_of_range'
what(): vector::_M_range_check: __n (which is 1000…
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Hi Thomas
I ran make_reference.py and had a look at the consensus_cluster.fa when I noticed that it contained clusters of size 1 even though I set --min_unique_size 2. Then, while having a closer l…