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bio-raum
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FooDMe2
A nextflow pipeline for the identification of species from mixed samples based on mitochondrial amplicons
https://bio-raum.github.io/FooDMe2/
GNU General Public License v3.0
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💡 [REQUEST] - Documentation - Improve output description
#69
gregdenay
opened
2 weeks ago
0
💡 [REQUEST] - MultiQC 'General Statistics' is useless
#68
gregdenay
opened
2 weeks ago
3
💡 [REQUEST] - Add read count to XLS table
#67
marchoeppner
opened
2 weeks ago
2
💡 [REQUEST] - Sample sheet generation
#66
gregdenay
closed
2 weeks ago
11
Release 1.0.0
#64
gregdenay
closed
1 month ago
4
Doc automation
#63
gregdenay
closed
1 month ago
0
setup github actions for doc versionning
#62
gregdenay
closed
1 month ago
1
[Improvement] Doc improvement
#57
gregdenay
closed
1 month ago
16
[Improvement] Revert Cutadapt module to Foodme1 implementation to properly deal with 5'<->3' trimming
#56
gregdenay
closed
1 month ago
1
[Doc] Add validation data for the Dobrovolny method to the doc
#55
gregdenay
closed
1 month ago
1
[Feature] Add per-sample JSON report
#54
gregdenay
closed
1 month ago
5
[Bug] CI - Superlinter does not obey .flake8 config
#52
marchoeppner
closed
2 months ago
2
[Bug] 'Sample' missing from benchmark report
#51
gregdenay
closed
2 months ago
1
[Bug] Java error OverlappingFileLockException
#49
gregdenay
closed
2 months ago
4
[Bug] CI test
#48
gregdenay
closed
2 months ago
8
patch 1.0.0.alpha.1
#47
gregdenay
closed
2 months ago
6
Krona report not working
#44
marchoeppner
closed
2 months ago
1
[Feature] Database name and version in report
#43
gregdenay
closed
2 months ago
3
[Improvement] Customize MultiQC report with a FooDMe 2 design.
#42
gregdenay
closed
2 months ago
2
[Improvement] Bump BLAST+ to last version anduse new feature of non-leaf taxid search to simplify workflow
#41
gregdenay
closed
2 months ago
1
[Testing] Check benchmarking result for Dobrovolny Method and optimize
#40
gregdenay
closed
2 months ago
4
[Testing] Testrunde Users (CoP)
#39
gregdenay
closed
1 month ago
2
[Improvement] Clean up and possibly refactor usage documentation
#38
gregdenay
closed
1 month ago
1
Reporting VSearch and DADA2
#24
gregdenay
closed
3 months ago
0
Linting
#9
gregdenay
closed
4 months ago
0
Add support for UNITE database
#4
marchoeppner
closed
4 months ago
0
Adding Superlinter as Github action
#3
gregdenay
closed
5 months ago
1
Re-write FooDMe scripts for cli use
#2
marchoeppner
closed
4 months ago
2
Create a Bioconda package for taxIdtools
#1
marchoeppner
closed
4 months ago
7