thomasvangurp epiGBS issues

thomasvangurp / epiGBS

Code for working with epiGBS data

MIT License

10 stars 7 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

The loaded bed file has less columns than expected, check the correctness of column assignment (or the BED style option)

#28 mehmet-cay closed 11 months ago
0
OverFlowError in mergeBSv3.py

#27 FleurGaBru opened 4 years ago
0
Spiking pattern in read coverage methylation_calling.py

#26 MaartenPostuma closed 4 years ago
0
looking for you

#25 relshire closed 4 years ago
1
merge_watson_crick.py very slow

#24 FleurGaBru opened 5 years ago
5
demultiplex.py put_output error

#23 MagnificaScience opened 5 years ago
0
Please indicate version number of Bioconductor packages

#22 FleurGaBru opened 6 years ago
0
Why is the sum of snps and methylated positions higher than the position in the merged vcf file?

#21 FleurGaBru opened 6 years ago
0
header of file snp.vcf.gz is confusing

#20 FleurGaBru opened 6 years ago
0
Integer overflow

#19 berguner closed 6 years ago
0
map_STAR.py: tmpdir not forwarded to sambamba

#18 MWSchmid opened 6 years ago
0
vsearch in cluster_consensus

#17 MWSchmid closed 6 years ago
1
rnbeads_analysis.py execution halted

#16 FleurGaBru opened 7 years ago
2
conda install version for epiGBS

#15 thomasvangurp opened 7 years ago
0
conda dependencies

#14 thomasvangurp opened 7 years ago
0
put pypy and python2.7 in requirements

#13 thomasvangurp opened 7 years ago
0
Control NT in barcode file

#12 thomasvangurp opened 7 years ago
0
mapping_variant_calling.py, function run_STAR() only works with --input_dir

#11 MWSchmid opened 7 years ago
0
make_reference.py: min_unique_size and clustering_threshold ignored?

#10 MWSchmid opened 7 years ago
2
demultiplex script gives error: no space left on the device - and question about cleaning up Illumina reads

#9 catarinamedeiros opened 7 years ago
0
GBS scripts

#8 NielsWagemaker opened 7 years ago
0
map_STAR.py : command not found

#7 justinjohns opened 7 years ago
1
Joined reads do not map with STAR

#6 thomasvangurp opened 7 years ago
0
Comma separated vs tab separated files

#5 thomasvangurp opened 8 years ago
4
When adding existing genome data to RNbeads with different length we get a crash

#4 thomasvangurp closed 8 years ago
0
rename_fast.py could not be downloaded

#3 xflicsu closed 8 years ago
1
any possible for reference-free for WGBS?

#2 xflicsu closed 8 years ago
1
def parse_bc won't read barcodes

#1 AlvarezMF closed 8 years ago
2