thomasvangurp epiGBS issues

thomasvangurp / epiGBS

Code for working with epiGBS data

MIT License

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issues

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The loaded bed file has less columns than expected, check the correctness of column assignment (or the BED style option)

#28 mehmet-cay closed 10 months ago
0
OverFlowError in mergeBSv3.py

#27 FleurGaBru opened 4 years ago
0
Spiking pattern in read coverage methylation_calling.py

#26 MaartenPostuma closed 4 years ago
0
looking for you

#25 relshire closed 4 years ago
1
merge_watson_crick.py very slow

#24 FleurGaBru opened 5 years ago
5
demultiplex.py put_output error

#23 MagnificaScience opened 5 years ago
0
Please indicate version number of Bioconductor packages

#22 FleurGaBru opened 6 years ago
0
Why is the sum of snps and methylated positions higher than the position in the merged vcf file?

#21 FleurGaBru opened 6 years ago
0
header of file snp.vcf.gz is confusing

#20 FleurGaBru opened 6 years ago
0
Integer overflow

#19 berguner closed 6 years ago
0
map_STAR.py: tmpdir not forwarded to sambamba

#18 MWSchmid opened 6 years ago
0
vsearch in cluster_consensus

#17 MWSchmid closed 6 years ago
1
rnbeads_analysis.py execution halted

#16 FleurGaBru opened 6 years ago
2
conda install version for epiGBS

#15 thomasvangurp opened 7 years ago
0
conda dependencies

#14 thomasvangurp opened 7 years ago
0
put pypy and python2.7 in requirements

#13 thomasvangurp opened 7 years ago
0
Control NT in barcode file

#12 thomasvangurp opened 7 years ago
0
mapping_variant_calling.py, function run_STAR() only works with --input_dir

#11 MWSchmid opened 7 years ago
0
make_reference.py: min_unique_size and clustering_threshold ignored?

#10 MWSchmid opened 7 years ago
2
demultiplex script gives error: no space left on the device - and question about cleaning up Illumina reads

#9 catarinamedeiros opened 7 years ago
0
GBS scripts

#8 NielsWagemaker opened 7 years ago
0
map_STAR.py : command not found

#7 justinjohns opened 7 years ago
1
Joined reads do not map with STAR

#6 thomasvangurp opened 7 years ago
0
Comma separated vs tab separated files

#5 thomasvangurp opened 8 years ago
4
When adding existing genome data to RNbeads with different length we get a crash

#4 thomasvangurp closed 8 years ago
0
rename_fast.py could not be downloaded

#3 xflicsu closed 8 years ago
1
any possible for reference-free for WGBS?

#2 xflicsu closed 8 years ago
1
def parse_bc won't read barcodes

#1 AlvarezMF closed 8 years ago
2