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thomasvangurp
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epiGBS
Code for working with epiGBS data
MIT License
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The loaded bed file has less columns than expected, check the correctness of column assignment (or the BED style option)
#28
mehmet-cay
closed
7 months ago
0
OverFlowError in mergeBSv3.py
#27
FleurGaBru
opened
4 years ago
0
Spiking pattern in read coverage methylation_calling.py
#26
MaartenPostuma
closed
4 years ago
0
looking for you
#25
relshire
closed
4 years ago
1
merge_watson_crick.py very slow
#24
FleurGaBru
opened
5 years ago
5
demultiplex.py put_output error
#23
MagnificaScience
opened
5 years ago
0
Please indicate version number of Bioconductor packages
#22
FleurGaBru
opened
5 years ago
0
Why is the sum of snps and methylated positions higher than the position in the merged vcf file?
#21
FleurGaBru
opened
5 years ago
0
header of file snp.vcf.gz is confusing
#20
FleurGaBru
opened
5 years ago
0
Integer overflow
#19
berguner
closed
6 years ago
0
map_STAR.py: tmpdir not forwarded to sambamba
#18
MWSchmid
opened
6 years ago
0
vsearch in cluster_consensus
#17
MWSchmid
closed
6 years ago
1
rnbeads_analysis.py execution halted
#16
FleurGaBru
opened
6 years ago
2
conda install version for epiGBS
#15
thomasvangurp
opened
6 years ago
0
conda dependencies
#14
thomasvangurp
opened
6 years ago
0
put pypy and python2.7 in requirements
#13
thomasvangurp
opened
6 years ago
0
Control NT in barcode file
#12
thomasvangurp
opened
6 years ago
0
mapping_variant_calling.py, function run_STAR() only works with --input_dir
#11
MWSchmid
opened
6 years ago
0
make_reference.py: min_unique_size and clustering_threshold ignored?
#10
MWSchmid
opened
6 years ago
2
demultiplex script gives error: no space left on the device - and question about cleaning up Illumina reads
#9
catarinamedeiros
opened
6 years ago
0
GBS scripts
#8
NielsWagemaker
opened
7 years ago
0
map_STAR.py : command not found
#7
justinjohns
opened
7 years ago
1
Joined reads do not map with STAR
#6
thomasvangurp
opened
7 years ago
0
Comma separated vs tab separated files
#5
thomasvangurp
opened
8 years ago
4
When adding existing genome data to RNbeads with different length we get a crash
#4
thomasvangurp
closed
8 years ago
0
rename_fast.py could not be downloaded
#3
xflicsu
closed
8 years ago
1
any possible for reference-free for WGBS?
#2
xflicsu
closed
8 years ago
1
def parse_bc won't read barcodes
#1
AlvarezMF
closed
8 years ago
2