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Creating folders if necessary...
Running CRISPR array search, it may take a while...
Running CRISPR cas search, it may take a while...
Working with 5 files
Working with file 1 - TARA_Cas9…
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Hi, I encountered such an error! Could you please provide the missing file? Thanks.
```
Load the assembly pseudochromosomes that have a CRISPR array and a Cas9[¶](http://222.200.186.124:9111/noteboo…
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Hi Alex
I run a trial test and found an error as below:
Command
python3.7 CRISPRloci_standalone.py -f NC_005230.fasta -output NC_005230.fasta.dir -st dna -cpu 32
Final output
summary crispr Examp…
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Hi,
I am a phd student and i'm currently working on developing a software for crispr/cas in-silico off-target prediction.
I am testing some software before the start and i'm trying also short aligne…
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Hello, it's very interesting to use the interaction features between molecules as encoding inputs for prediction models.
Can we use the features of the 256 simulated RNA-DNA hybrids that you menti…
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Hi,
I'm trying to run the Singularity version of CRISPRCasFinder (version 4.2.20) with the -faa and -gff options (I generated my GFF file using the Dfast annotator, see below), but I'm getting the …
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This is just to document an error that @JeffXiePL came across in this notebook:
https://github.com/JeffXiePL/pydna/blob/docs_peilun/docs/notebooks/CRISPR.ipynb
You were trying to instantiate a c…
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Hi, I got an error: "FileNotFoundError: [Errno 2] No such file or directory: 'output_cmscan.txt'".
How can I get this problem solved ?
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We have been working hard on a database and some [cool demos](https://github.com/phageParser/phageParser/tree/master/demos) of analysis you can do with it. Our dream is to build a web front end so tha…
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Currently, if there are multiple copies of a part found during the directory inventory, one will be arbitrarily selected to use. Instead, we should cause this to be an error, so that it can fail fast …