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I have been trying to install this library in Ubuntu 22.04 so I can integrate together within a bigger cryo em image processing framework. However, I encountered some problems, one of them fixed in PR…
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I enjoyed reading your preprint ["DynaMight: estimating molecular motions with improved reconstruction from cryo-EM images"](https://www.biorxiv.org/content/10.1101/2023.10.18.562877v1). Although I co…
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Hi,
I am attempting to utilize ColabFold to predict the 3D structure of a protein dimer connected by a disulfide bridge.
I understand that AlphaFold can accomplish this using the following comma…
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* way to slice up SO(3) (rotations) to do grid search
* input (grid search), output 2D rotated planes
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For entries with non x,y,z axis ordering e.g. z,y,x running update_header_from_data sets mx equal to nx, my equal to ny etc.
However mx is declared as sampling along X axis of unit cell not in ter…
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We received a request for a tutorial demonstrating `backprojection`. I do not believe this requires any new application code at this time, just added documentation.
This could be accomplished by r…
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I am trying to run the following command with the standard values but just changing the threshold of the run. It has difficulties at many stages in the program mostly I think related to needing furthe…
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Hello -
I was testing my model-angelo v.1.0.1 installation using this RNA only cryo-EM map:
https://www.rcsb.org/structure/6ues
https://www.emdataresource.org/EMD-20755
But, with this as i…
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I usually organize my cryo-EM data based on relion recommendations. See section 2.1 of [Link](https://hpc.nih.gov/apps/RELION/relion31_tutorial.pdf).
For example, I put my tif files under Movies/10…
zruan updated
3 years ago
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The Moleculenet publication has accomplished much in terms of having standardized problems for supervised learning over chemical structures. However over the past couple of years we have seen some ba…