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compSPI
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reconstructSPI
inverse problem solvers
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test fourier slice theorem
#63
geoffwoollard
closed
2 years ago
1
em refactor: wrap each em iteration
#62
geoffwoollard
closed
2 years ago
2
em refactor: remove griddata slice insertion
#61
geoffwoollard
closed
2 years ago
0
expectation maximization refactor
#60
geoffwoollard
closed
2 years ago
2
iterative_ref: refactor to be more modular
#59
geoffwoollard
opened
2 years ago
0
Add new test for shape
#58
shekshaa
closed
2 years ago
1
Uniform Sphere Griding
#57
shekshaa
closed
2 years ago
2
trilinear interpolation for inserting slices
#56
geoffwoollard
closed
2 years ago
2
merge dev into test_iterative_refinement
#55
geoffwoollard
closed
2 years ago
0
Test `IterativeRefinement.iterative_refinement`
#54
geoffwoollard
closed
2 years ago
2
interative ref: insert slice notebook
#53
geoffwoollard
opened
2 years ago
0
iterative ref: insert_slice from one plane
#52
geoffwoollard
closed
2 years ago
0
Itr fsc
#51
arjunsingh3600
closed
2 years ago
9
iterative ref: more tests for insert_slice
#50
geoffwoollard
opened
2 years ago
0
iterative ref: log expectation maximization loss
#49
calhep
closed
2 years ago
1
iterative ref: build_ctf_array
#48
jedyeo
closed
2 years ago
9
Wiener Filter Tuning
#47
thisFreya
closed
2 years ago
1
iterative ref: 3d fft (in off_dev)
#46
geoffwoollard
closed
2 years ago
2
rotate to keep dc component in correct location
#45
geoffwoollard
closed
2 years ago
2
Iterative refinement insert slice: griddata version.
#44
thisFreya
closed
2 years ago
7
expand_1d_to_3d outer edge zeros documentation
#43
geoffwoollard
closed
2 years ago
2
iterative ref: write tests for iterative_refinement
#42
geoffwoollard
opened
2 years ago
1
iterative ref: use compSPI 3d fft functions
#41
jedyeo
closed
2 years ago
4
Generate Slices
#40
thisFreya
closed
2 years ago
9
iterative ref: test uniform distribution of SO(3)
#39
geoffwoollard
opened
2 years ago
0
test_binary_mask_3d - circle inscribed in square
#38
geoffwoollard
closed
2 years ago
2
iterative ref: learn white noise (sigma) iteratively
#37
geoffwoollard
opened
2 years ago
1
iterative ref: generate_xy_plane
#36
jedyeo
closed
2 years ago
13
iterative ref: log expectation maximization loss
#35
geoffwoollard
closed
2 years ago
0
Compute bayesian weights
#34
geoffwoollard
closed
2 years ago
4
ReconstructSPI Workflow Infrastructure
#33
thisFreya
opened
2 years ago
5
iterative ref: Compute bayes factors with/without ctf convolution
#32
geoffwoollard
closed
2 years ago
1
iterative ref: Generalize to use two separate half maps
#31
geoffwoollard
opened
2 years ago
0
iterative ref: zero pad to avoid ctf aliasing
#30
geoffwoollard
opened
2 years ago
0
iterative ref: MASTER ISSUE: Implement expectation maximization iterative refinement
#29
geoffwoollard
opened
2 years ago
0
Uniform discritization of SO(3) via random rotation matrices
#28
thisFreya
closed
2 years ago
6
Expand 1D radial array to voxelized 3D spherical shells.
#27
thisFreya
closed
2 years ago
4
add maintainers
#26
geoffwoollard
opened
2 years ago
0
iterative ref: implement and benchmark methods to normalize half maps
#25
geoffwoollard
opened
2 years ago
0
iterative ref: make use of torch and compSPI 3D FFT.
#24
thisFreya
closed
2 years ago
0
sorry, wrong repo!
#23
geoffwoollard
closed
2 years ago
0
derive what is optimized in iterative refinement
#22
geoffwoollard
closed
2 years ago
1
feat: docstrings and overall design for expectation maximization iterative refinement
#21
jedyeo
opened
2 years ago
17
iterative ref: expand_1d_to_3d
#20
geoffwoollard
closed
2 years ago
6
iterative ref: compute_fsc
#19
geoffwoollard
closed
2 years ago
0
iterative ref: insert_slice
#18
geoffwoollard
closed
2 years ago
2
iterative ref: add more tests to wiener filter to test its functionality and limiting cases.
#17
geoffwoollard
closed
2 years ago
3
iterative ref: compute_bayesean_weights
#16
geoffwoollard
closed
2 years ago
0
iterative ref: generate_slices
#15
geoffwoollard
closed
2 years ago
3
iterative ref: generate_xy_plane
#14
geoffwoollard
closed
2 years ago
0
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