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## Expected Behavior
cwltool --print-rdf should use conventional valid namespaces where they exist.
## Actual Behavior
Wrong prefix for the `rdfs` namespace, seems to be caused by `` being in…
stain updated
7 years ago
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Seems like bunny has an issue with workflows packed by cwltool, possibly this is a bug with $graph handling.
I'll try to describe some steps to reproduce
```
git clone https://github.com/common-w…
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Hi all,
I am experimenting with `cwl.output.json` to get the results back from a CommandLineTool that executes in a Docker environment. This works fine, but there appears to be a problem when re-…
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Once a user has created a CWL workflow and makes it available at some URL (for example, an Application Package available from Dockstore), we can imagine triggering the OGC register() method to automat…
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## Expected Behavior
--skip-schemas - I believe has to skip to download them
I use --non-strict --skip-schemas
## Actual Behavior
Schema salad still downloads it
## Workflow Code
```
…
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Hi guys,
I suggest change print wf.list_steps() to print (wf.list_steps()) in the notebook ICDAR2017_shared_task_workflows.ipynb
Also, I would not able to run cwltool ochre/cwl/ICDAR2017_shared_…
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Hi,
We would like to request a new feature that puts the result from multiple steps in a workflow into a new directory. This would help dramatically with file organisation in the final output direc…
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## Expected Behavior
When staging input file to the output directory the secondaryFiles should be also staged into the same directory, otherwise tools fails to execute with "path is outside the desig…
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cwlでつくる？
ymlでinput情報を揃える。
working dir等どうすればいい？
- https://github.com/Barski-lab/workflows/blob/master/tools/trimgalore.cwl
- https://github.com/common-workflow-language/workflows/tree/master/tool…
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I am using minikube 0.28 to start a kubenetes 1.64, and using python 2 with reana 0.20.
I could run through the common-workflow-language test with only 3 failures. However, when I were testing with m…
xzhub updated
5 years ago