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Seems like bunny has an issue with workflows packed by cwltool, possibly this is a bug with $graph handling.
I'll try to describe some steps to reproduce
```
git clone https://github.com/common-w…
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Thanks for submitting your feedback to Dockstore.
Please fill in the appropriate section depending on whether you want to submit a feature request or a bug report.
## Feature Request
cwltool should…
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and their `location` fields updated with a Galaxy URI
can be discovered via `cwltool --print-deps ~/common-workflow-language/v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl` or directly via `cwltool…
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When trying to run the compile example, the provided command `/cwl-runner --basedir ${PWD} compile1.cwl` does not work (with `cwltool`, at least), even when disregarding the leading slash of the comma…
kblin updated
8 years ago
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I see a stochastic error for certain jobs when kicking off many jobs at the same time (~100 or so).
## Expected Behavior
`tmp dir` should be created once and subsequently checked for existence.
…
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- [Loops](https://github.com/common-workflow-language/cwltool/pull/1641/files#diff-c5dc3ffe2d6efbe4c9733addfb2c92f6f6a7b2ce1d5471e051addbb4679b5b3cR186)
- [CUDARequirement](https://github.com/arvados…
mr-c updated
3 months ago
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## Expected Behavior
Tell us what should happen
Validation error
## Actual Behavior
Tell us what happens instead
No validation error
## Workflow Code
```
cwltool https://raw.githubus…
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There is no current definition in https://www.commonwl.org/v1.2/CommandLineTool.html for `cwltool:CUDARequirement`.
Considering it is the *"core"* CWL specification, this is understandable.
Howev…
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@fabricebrito
I recommend adding `cwltool:CUDARequirement` with a `cudaDeviceCountMin` to the hints of the CWL.
https://github.com/Duke-GCB/calrissian/blob/4ec616d0cc432f3be4a38d1eaa5f2afa049b…