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Hi,thanks for publishing such a good tool. I have some questions about the inputs of HERA:
1. Can I use trimmed reads from canu as HERA's input reads? And which is better, corrected reads or trimmed …
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Hello,
I'm one of the developers of [HINGE](https://github.com/fxia22/HINGE). We have been experimenting with integrating Racon into our pipeline. We like the current results but our current pipeline…
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Would like to take a benchmark of different mapping algorithms
- bwa mem
- GraphMap
- https://github.com/isovic/graphmap
- canu
- https://github.com/marbl/canu
- miniAlign
- https://gith…
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Hey guys,
- I have been trying to run Falcon on a single machine but the config file is somewhat complicated to understand and after 8 days (200h) running, the process is still working on read erro…
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For out large sequences we are still getting the occasional Duplicate Overlap that is killing the whole process.
```
raw_reads.55.raw_reads.213.N3: 324,318 all OK
raw_reads.56.raw_reads.213.C…
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Hello,
I think 'split_dis' is a great idea and I want to use it to help me get better genome assembly, for example, to generate more complete repeat region, but I have some question about the usag…
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Python 2.7.9
pip 8.1.2 from /usr/local/python-2.7/lib/python2.7/site-packages (python 2.7)
setuptools 27.3.0 from /usr/local/python-2.7/lib/python2.7/site-packages (Python 2.7)
I have set parameters…
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I updated FALCONintegrate a few days ago to update all related sub modules because of the recent pypeFLOW fix to the job_queue variable for SLURM. However, now when a job completes in SLURM, it is st…
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I am trying to use this to assembly the nanopore reads, but when I run the hinge clip step, I got this error message.
"'
raymond:$hinge clip-nanopore ecoli.edges.hinges ecoli.hinge.list t1
/opt…
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Hello,
My FALCON assembly (on a SLURM system) has been running for 6 days and seems to have just failed due to an error in 0-rawreads/daligner-runs/. I tracked the specific stderr and have attache…