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Hi,
Now I'm already doing other steps, but I didn't do pan-genome decontamination,
because I am using roary for the first time, Counld you tell me how to do this in detail?
Thanks!
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this is not a "soon" issue, but there appears to be substantial opportunity for using amino acid k-mers to find contamination...
e.g. https://github.com/bluegenes/2020-gtdb-smash/issues/1
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Hi Simon,
Firstly, thank you for this tool - it has been of great use in a viral identification pipeline. I had a question about the virome decontamination setting for the CyVerse implementation o…
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**Description:**
Interacting with Sanitron 500 (Entry: 46185) for Decontamination Quest (Entry: 27635) should move you through some animations and processes and complete the quest, but nothing …
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Dear author:
Thank you for developping this wonderful tools. When I'm applying it to my data, there are some taxas that are not included in "cell.lines.txt" or "Table S4" when I'm doing decontaminati…
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From proposal
> We will apply the new infrastructure to DR1 and DR2 data, to test and compare standard SI decontamination methods. We will generate vital products for any clustering measurements made…
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### ---Issue Report---
### Description of Issue
It seems that changing the radiation values of the Basic Decontamination Unit does not affect its description.
**Screenshots (if applicable):**
!…
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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### Model introduction
This model is created by Microsoft as an efficient tiny model based on heavily filtered web data and synthetically created training data
### Model URL
https://huggingface.co/…
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Hello, I sincerely appreciate your excellent work.
Due to copyright issues with the pile, it's no longer possible to download the 825GB of data, so I can't use the decontamination feature of harnes…