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**Describe the Bug**
Wnen I use ggpicrust2 function, it always generates the error. Any help would be greatly appreciated.
Here's my dataset including the "pred_metagenome_unstart.tsv" file and "m…
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**Describe the Bug**
I am trying to re-graph a portion of my code that used to work flawlessly, but am now getting all sorts of errors.
**Reproducible Example**
Here is the code for the figure (…
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Hello, a newbie summer intern here, wanted some advice!!
While I was making some grammatical and technical edits to the differential data analysis(DAA) chapter, I was wondering how it will be like …
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Good morning
I have one differentially abundant pathway between two groups and wish to plot it using the "pathway_errorbar":
p
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I can run ggpicrust2 with the provided example data (but not plot it, made a separate entry for that #101) but I am struggling to get it work with my own data.
Here is my code
```r
library(read…
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### Description of feature
When analyzing a large number of samples using the differential abundance pipeline, the markdown notebook compilation step fails due to memory issues.
- Error message: "…
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Hello,
This is a very good tool! However, I have some questions while running the code.
1, I want to calculate the density changes of a specific cell type subpopulation under different treatment…
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## Constraining variables
For differential abundance, may be best to
1. Restrict design factor to binary variables
2. Have easily accessible derived vars which would allow the user to create binary va…
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This recent paper presents Analysis of Composition of Microbiomes (ANCOM)
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4450248/
Congrats @wdwvt1, @rob-knight! I would love to see this method in qiime!…
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Hello,
I encountered an error when trying to generate a heatmap using the "Differential Abundance" tab.
Steps to Reproduce:
1. Navigate to the Differential Abundance tab.
2. After running the…