-
We got back 150 bp read data from NovoGene from the SATAY experiments. Based on a manual inspection of the data, we see that:
- Each read also contains the sequence of the primers used for amplific…
-
## Bug Report
### Affected tool(s)
_picard ValidateSameFile_
### Affected version(s)
- [x] Latest public release version [3.1.1]
- [ ] Latest development/master branch (not tested)
### Des…
-
### Description of feature
Library preparation kits come with unmethylated and methylated DNA controls that are added to samples (e.g. NEBNext EM-seq). It would be useful to supply methylseq with the…
-
**Python script that performs alignment based on user input**
**7.5/8**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
| Read in inputs | 2 | 2 |
| Initialize matri…
-
**Python script that performs alignment based on user input**
**2.75/8**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
| Read in inputs | 2 | 1.5 |
| Initialize ma…
-
Hi,
I am working on the extraction of mitochondrial genes (mainly for COI) from UCE data. both two fq
file are 3.7 GB, i use the conmmand as follows:
MitoGeneExtractor-v1.9.5 -q AS_aura_YN_1.fq …
-
### Description of feature
The pipeline currently seems to have a bottleneck at the alignment -> markdups step, where all the alignment has to be completed before any markdups processes will begin.
…
-
So I was surprised to find you can align Strings to each other:
```
julia> x= pairalign(LocalAlignment(), "ACA", "AAA", model)
PairwiseAlignmentResult{Int64, String, String}:
score: 6
seq: 1 …
-
Frameshift aignments are very useful for Nanopore data, where indels are common. It can also be used for virus-related research, as [some phages have conversed programmed frameshifts](https://www.cell…
-
Hello! Thank you for providing such a useful software.
My original hic data are all paired reads of equal length of 150bp. I hope that the simulated data are also regular 150bp paired reads.
Bu…