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BioJulia
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BioAlignments.jl
Sequence alignment tools
MIT License
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#91
jakobnissen
closed
2 weeks ago
0
[Feature]: Add method to remove sequence match info from cigar
#90
MillironX
opened
1 year ago
1
Release v3.1.0
#89
MillironX
closed
1 year ago
1
Grantham's substitution matrix
#88
KaparaNewbie
closed
1 year ago
4
Add a `cigar` method and `BioAlignments.Alignment` constructor for XAM.jl optimisation
#87
CiaranOMara
opened
1 year ago
0
Release v3.0.0
#86
MillironX
closed
1 year ago
1
Release v2.3.0
#85
MillironX
closed
1 year ago
1
Friendly request to `@deprecate` API changes via semver
#84
dehann
opened
1 year ago
2
Add getter methods (and forwarded getter methods) for alignment types
#83
MillironX
closed
1 year ago
1
Outdated documentation for SAM/BAM in BioAlignments is first hit in search
#82
simon-anders
closed
2 years ago
6
Refactor tests
#81
kescobo
opened
2 years ago
0
Weird error with `AffineGapScoreModel()`
#79
jakobnissen
opened
2 years ago
0
Doctests
#78
CiaranOMara
closed
2 years ago
2
Housekeeping
#77
CiaranOMara
closed
2 years ago
2
Hotfix/2.2.0
#76
CiaranOMara
closed
2 years ago
5
Alignment of 2 LongAminoAcidSeq with AffineGapScoreModel from docs goes out of bounds
#75
kool7d
opened
2 years ago
1
Do these methods work and are they tested?
#74
CiaranOMara
closed
2 years ago
1
Extract start and end positions from a PairwiseAlignment
#73
rohanmaddamsetti
opened
2 years ago
1
BioSequences v3 and BioSymbols v5
#72
CiaranOMara
closed
2 years ago
13
Add ssh key to TagBot workflow
#71
CiaranOMara
closed
2 years ago
1
Add downstream tests
#70
CiaranOMara
closed
2 years ago
1
`AlignmentAnchor` method signature
#69
CiaranOMara
opened
2 years ago
1
TagBot trigger issue
#68
JuliaTagBot
closed
2 years ago
5
TagBot not triggering.
#67
kescobo
closed
2 years ago
0
Zenodo Prep
#66
kescobo
closed
2 years ago
3
Lack of an article to cite BioAlignments.jl
#65
Hugemiler
closed
2 years ago
1
Add support for 'meta' alignment operations (`OP_PAD` and `OP_HARD_CLIP`)
#64
MillironX
closed
1 year ago
5
OP_BACK has no use?
#63
jakobnissen
opened
2 years ago
2
Update the alignment figure
#62
alyst
closed
1 year ago
1
Update docs with alignment position
#61
alyst
closed
2 years ago
3
Add more SubstitutionMatrix operations
#60
timholy
closed
2 years ago
8
Bug in `OverlapAlignment`
#59
jakobnissen
closed
2 years ago
1
The API of accessing fields of BioAlignments
#58
jakobnissen
opened
2 years ago
0
What does the two integer fields in `Alignment` do?
#57
jakobnissen
opened
2 years ago
1
`ref2seq` returns a position outside of the sequence length
#56
MillironX
closed
1 year ago
0
Get reference and query from `PairwiseAlignment`
#55
jakobnissen
opened
3 years ago
2
Inconsistent when aligning distinct sequence types
#54
jakobnissen
opened
3 years ago
1
Allow compact printing of alignments
#53
jakobnissen
closed
3 years ago
5
CompatHelper: bump compat for "BioSymbols" to "5"
#52
github-actions[bot]
closed
1 year ago
1
Multiple alignment manipulation
#51
BioTurboNick
opened
3 years ago
3
Prepare for minor release
#50
alyst
closed
3 years ago
8
"master" vs "develop" branches
#49
alyst
closed
3 years ago
1
Remove BioJuliaRegistry
#48
alyst
closed
3 years ago
2
New CI based on GH-actions
#47
alyst
closed
3 years ago
2
Obscure error when aligning sequences with gaps
#46
jakobnissen
opened
3 years ago
0
Add alignment string position support
#44
alyst
closed
3 years ago
12
How to get the score of two alignments?
#43
aadimator
opened
3 years ago
0
Allow BioSequences 2.0
#42
DilumAluthge
closed
4 years ago
4
Release/v2.0.0
#41
CiaranOMara
closed
4 years ago
4
CompatHelper: bump compat for "Automa" to "0.8"
#40
github-actions[bot]
closed
4 years ago
1
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