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The current definition of ‘gene’ is “a sequence region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, trans…
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Abschnitte des Chromosomes neu einlesen (regex_annotation.py): Für Gen nimm Exons (direkt annotiert), ermittel Promoterregion (vor dem Genstart), ermittel Introns (alles auf Gen, was nicht Exon ist) u…
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Hello, thank you for your convenient tools. I want to only focus on TFs regulating a exact set of genes and construct regulatory network on it. How can I do it? Is it right to use gene sets tpms expre…
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Hi,
First of all, thank you so much for sharing such an amazing analyzing tool for us.
I believe ActiveDriverWGS can help and move my project forward.
I think I can prepare equivalent files of "c…
FL512 updated
8 months ago
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Hi all,
Thank you very much for such a great tool!
I faced an issue when I was trying to run run_scenicplus:
```
>>> try:
... run_scenicplus(
... scplus_obj = scplus_obj,
... …
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H-MAGMA https://doi.org/10.1038/s41593-020-0603-0
eMAGMA https://doi.org/10.1101/854315
Enhancer to Gene connections https://doi.org/10.1101/2020.09.01.278093
RegulomeDB v2.0 https://regulomedb.org…
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~~Please submit your assignment for week 8.~~
**`README.md` file with commands and answers to questions**
**3.75/5**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
…
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[Steps in data analysis](http://barc.wi.mit.edu/education/hot_topics/ChIPseq_2016/AnalysisofChIP-seqData2016.pdf)
0. **Preprocessing**:
i) Bad quality -> Tool: Use “FASTQ Quality Filter” and/or …
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~~Please submit your assignment for week 8.~~
**`README.md` file with commands and answers to questions**
**4.5/5**
| Exercise | Points Possible | Grade |
| -------- | ------- | ------- |
|…
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Thank you for providing very useful software.
I wonder if this software is suitable for bulk tissue ATAC-seq and RNA-seq.