-
STATUS: DRAFT
Use case:Queries that can unify Gene expression/function/markers whether they are proteins, genes or transcripts.
TBD:
- Do we simply unify proteins/transcripts/genes or do we ma…
-
First of all thanks that more and more packages are available for arm64. `ensembl-vep` is available as `noarch`. However, it cannot be installed since neither `perl` nor `perl-bio-db-hts` is availble …
-
I get this warning for every run, which is not surprising, as I am running on a compute node with no internet connection. I looked through the docs and am unclear why JaBbA would be using Ensembl/biom…
-
On NodeNorm, [ENSEMBL:ENSP00000263368](https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=ENSEMBL%3AENSP00000263368&conflate=true) exists as a single-identifier clique. However, ve…
-
Hi,
Thanks for developing this nice tool.
I'd like to use my own fasta and gff to annotate the VCF file, according to the mannual:
```
grep -v "#" data.gff | sort -k1,1 -k4,4n -k5,5n -t$'\t'…
-
Dear Ensembl Support,
I am experiencing significant delays while using the VEP server for variant annotation. Could you confirm if there is ongoing maintenance or server issues?
Thank you for yo…
-
As noted in https://github.com/NCATSTranslator/Feedback/issues/340, Babel has multiple distinct Ensembl gene identifiers for the TNF gene:
* NCBIGene:7124 (which is combined with [HGNC:11892](https:/…
-
Hi, it's great to have GenomicRanges in Python and really appreciated.
I've encountered a coordinate issue when loading a GENCODE gtf file with the `genomicranges.read_gtf()` function (I'm using v…
kijiy updated
2 weeks ago
-
We currently handle a prefix-based report where we report on the prefix-based composition of each clique -- for example, the final rows in `reports/Gene.txt` are:
```
frozenset({('RGD', 1), ('NCBI…
-
Hi PGS Catalog team, we love this resource but we wanted to bring to your attention an issue with INDEL harmonization:
My team and I noticed that the ENSEMBL-harmonized coordinates provided for IND…