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#### Is your feature request related to a problem? Please describe.
#### Describe the solution you'd like
FAIR data point is a standard describing a REST API for creating, storing, and serving F…
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## Motivation
Pangenomes are key to understanding the distribution of gene content and synteny across closely related genomes. Currently, the driving force behind this strategy is sequence alignmen…
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Hi,
I'm running make p_compressed, but I think it may be stuck? I modified the make file to use 12 threads instead of one (which was taking forever), but it's been stuck here for nearly two hours.…
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Apologies if this is not the appropriate place to ask questions.
I recently noticed that this repository provides test data files under the `test` directory. Could you please clarify whether these …
athos updated
2 months ago
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> In fact, for three of these four animal coronaviruses, the strongest correlation between the number of viral and animal reads is for the animal species known to be infected with the virus...
The …
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We have represented known frameshifts in the genome sequence as 1-2 bp overlaps in CDS features (we were once advised by Ensembl that this was the correct way to annotate these). This is necessary …
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My name is namcheol kim.
I am going to do a LPS imputation test based on 1kgp3 panel.
My input :
sample1_R1.fastq.gz
sample2_R2.fastq.gz
Panel :
1kgp3 panel
I read this url.(https:/…
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Anywhere in fgbio we need to access FASTA for reference genomes or similar we end up using HTSJDK's `ReferenceSequenceFile` and related classes (`ReferenceSequenceFileFactory`, `ReferenceSequence`). …
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there are three ways to do this.
* mapping based: map reads, call variants, build a variant call file (VCF), estimate ANI from VCF SNP calls.
* mapping based: create a new consensus genome based o…
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Under "Visualization using a Genome Browser (IGV)", step 2 does not work, at least on usegalaxy.org:
https://github.com/galaxyproject/training-material/blame/master/topics/sequence-analysis/tutorials…