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Hi all!!
I've been trying to use the function gdcRNADownload() to download RNAseq data from TCGA but no matter what RNAseq type I try, I always get the same error:
Successfully downloaded: 0
Wa…
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I installed the hooknet-tls with `docker build -t hooknet-tls .`
Then I want to test whether it can work successfully. I downloaded the TCGA-18-5592-01Z-00-DX1.tif in https://drive.google.com/file/…
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some people use stuff like **babel-plugin-module-resolver** with a root set to some dir in the project and they prefer their paths to not start with `./`. For these people, we'll add this options so t…
capaj updated
7 years ago
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Investigate whether VCF files downloaded from the GDC portal work with the [vcf track type](https://jbrowse.org/docs/variants.html).
Note: VCF tracks require the VCF file to be gzipped and an index…
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Hi,
I am using the calculated data from STAR to infer the cancer type using TULIP.
There are many genes without expression value, and I encountered some mistake after running the command, which …
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Hello!
Thank you for the benchmark! From your paper, you used data described at [phs000178.v11.p8](https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000178.v11.p8)? From that …
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Hi,
Thanks for TCGAbiolinks package, it is very useful. One thing i wonder, how i can get the information on platform for tcga samples, some cancers were sequenced on different platforms (such as G…
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Hi everyone,
I'm trying to get clinical data but I got error for a few cases.
`cTCGA