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It seems that changing `k.weight` in RunAzimuth does not influence the results and does not allow to workaround the error in FindWeights function:
`> so1
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There have been talks of having a page to help users derive cell types from an unannotated dataset.
From what I understand (and there are probably some blank gaps),
1. User selects dataset with …
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Hello,
Using the metawrap pipeline, I have annotated the bins with prokka. The prokka output files show the gene present in a bin but it doesn't tell its abundance. Is there a way to find the gene…
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From #7 we see that ZBTB16 & SLC39A1 are strongly anti-correlated in ORF data and CRISPR data, and it's novel (not seen in Evotec KG).
Zinc finger and BTB domain-containing protein 16
SLC: Zinc t…
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Thanks for this nice tool @matdoering
I wonder whether it would be possible to specify the desired amplicon size. In my case, I want to amplify small regions of a bunch of genes (one per gene), bu…
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Finding expected missing small genes example, nce1
(this should work for most small, reasonably conserved proteins even if we don't have a clue about the location)
Pombe. SPAC12G12.17 /nce1
…
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Current gene finding algorithm (`FindGoodGeneGroups`, output `genes/good.bs`) is too strict. It joins about 25% of genes to good gene groups.
New algorithm. Build a graph of genes. Genes are connecte…
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I am interested in finding out how to interpret the significance of a gene where the best_pairwise_p is < 0.05 or lower but the worst_pairwise_p is non-significant. Assuming this gene is below the Bo…
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Looking over results, it seems to me that omnicorp (scigraph) might only be finding genes by symbol. For instance, insulin might only be found by "INS". There are two points here:
1. It would pr…
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We've been assessing the result-level enrichment/augmentation with PFOCR hits. The output today has some consistent issues:
* Too many hits (burden on performance?)
* Low quality, irrelevant hits
…