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there are three ways to do this.
* mapping based: map reads, call variants, build a variant call file (VCF), estimate ANI from VCF SNP calls.
* mapping based: create a new consensus genome based o…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
I am using funannotate 1.8.7
**Describe the bug**
Th…
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Generate test sets to evaluate assembler performance.
Therefore, use Arabidopsis genome and chloroplast from Genbank and simulate short read libraries fulfilling those characteristics:
1. Read l…
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I suggest the following changes:
1.
**Problem:** One tool/image could implement multiple interfaces. By using the current list we would have to list the an image for each interface.
**Soluti…
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Hi there,
I am using GenomeScope2 to check the heterozygosity rate of a plant genome (2n=28) with HiFi reads.
The initial assembly with Hifiasm was used for running a mummerplot with A. thalian…
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The bioconda-util.Recipe class cannot handle duplicate keys.
An example of a duplicated key is in the package Mira, where there is an url for linux and an url for mac:
```
package:
name: mira
…
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Dear @alekseyzimin,
I wonder if you have ever considered including within the masurca pipeline any software for the RNA scaffolding of the assembly generated. Sometimes, people assembling a genome wi…
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Hi, there
I have obtained the EVM final results , but there are some problems that I am confused. Need help!
![image](https://user-images.githubusercontent.com/31943359/118354782-67c01080-b59f-11eb…
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Features of the dataset:
- from a species with a decent reference genome that is well annotated (or at least, as well annotated as any reference, which is not very well)
- fairly small dataset, or wit…
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Hi @elimoss
I am using your tool for assembling my long reads metagenome. I have a doubt in the procedure of assembly that does the lathe also bin the genomes before doing the circularization or do w…