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Hi,
I'm trying to use stat_coverage function with a GRanges object with multiple seqnames. When I plot the data, the facets are not created and just the first sequence is plotted. Following your exam…
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I've encountered what seems like a bug when attempting to set color or fill scales in two different tracks. Basically, I would like both tracks to have the same color limits so they can be directly co…
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Trying out `ggbio` for the first time. I get stuck on the first example I try:
library (ggplot2)
library (ggbio)
library (EnsDb.Hsapiens.v86)
ensdb
wibom updated
6 years ago
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Now of course you can use rect geom to mimic heat map easily, maybe a more general heartmap geom should be there for circular view too.
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First time to try autoplot after the installation. I followed the examples to get started, step by step.
> autoplot(gr)
> Error in rep.int("", ncol(r)) : incorrect type for second argument
R version…
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1. currently need to specify "geno","fixed"... types, different type indicate different data subset and different method.
2. should I start withh autoplot, SummarizedExperiments first? then think abou…
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Hi Michael,
I found a bug in the bbgio function getLimits: NA values present in the y values give NA for both min and max values. This leads to an error when combining plots using tracks. Here's the …
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Feature will plot the gene CAI chromosome locations
1. read in genome FASTA, GFF3 and CAI information
2. Build a data frame of GFF3 positions and CAI information
3. Color code the CAI
4. Plot …
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Right now, there's no easy way to see what each autoplot method does, in the man pages. For example, what does autoplot,VCF do?