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Hello, I have some problems with some fasta files.
I've uploaded 330 sequences, this is the output:
**Done. Total sequences: 330. Succeeded: 116. Failed: 214**
The problem is the following:
**U…
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## Description of bug / unexpected behavior
trying to set up logging in a config file fails
## Expected behavior
logs written to a file
## How to reproduce the issue
Code for reproduci…
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Nachdem Manfred mir die restlichen Daten geschickt hat, hier mal ein kleines Update:
Es gibt jetzt 66 (BL) + 29 (HD) = 95 Patienten. Von den 66 BL Patienten gibt es zu 55 ein FU File.
Nimmt man HD u…
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I have a good quality GG/TC MNP:
```
$ freebayes -f /data/reference/ucsc/hg19/hg19.fa -r chr22:42526560..42526563 -F 0.3 reads.bam 2> /dev/null| cut -f1-6 | grep -v "##"
chr22 42526561 . GG …
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### Setup
I am reporting a problem with Biopython 1.8, Python version 3.7 , and operating
system as follows:
3.7.8 | packaged by conda-forge | (default, Jul 31 2020, 02:25:08)
[GCC 7.5.0]
CP…
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I am seeing an unexpected MSA and consensus sequence. By eye, I can see a more parsimonious result. See below for details. Any insight would be appreciated.
Actual Output
```
Consensus (14…
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Hi Gotoh,
I found some gene could be annotated by the 2.3.3c, but not by 2.4.03. And these genes have great gene structrue by manual check. I am afraid there is some missing in the unidirectional a…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```
2.7.14 (v2.7.14:84471935ed, Sep 16 2017, 12:01:12)
[GCC 4.2.1 (Apple Inc. buil…
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항상 실패가 뜨던데 이거 어떤기능이고 왜 항상 실패하는건가요?
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I would expect the snippet below to print more alignments, that have residue pairs ('Q', 'N') and ('N', 'E') prepended to the aligned region (see output from my own implementation). BLOSUM62 scores fo…