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rvaser
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spoa
SIMD partial order alignment tool/library
MIT License
158
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Parallelization
#74
mesti90
opened
6 months ago
0
spoa::Graph::GenerateConsensus additional overload
#73
tbrekalo
closed
11 months ago
3
Fix meson subproject loading
#72
rvaser
closed
11 months ago
0
Illegal Instruction
#71
heliziii
closed
6 months ago
2
Update to C++17 plus a new meson option
#70
rvaser
closed
1 year ago
0
Warning/build fixes
#69
rvaser
closed
1 year ago
0
Add meson support
#68
rvaser
closed
1 year ago
0
Please set policy CMP0074 to NEW
#67
jguhlin
opened
1 year ago
1
make: *** No targets specified and no makefile found. Stop.
#66
kcjavier21
closed
1 year ago
1
adding the library
#65
asylvz
opened
1 year ago
0
'Cleverly' align sets of redundant sequences
#64
AndreaGuarracino
closed
1 year ago
2
Unexpected alignment results
#63
paoloshasta
closed
1 year ago
6
Num modified
#62
nlopez98
opened
2 years ago
1
How to prevent gaps at the ends of the alignment?
#61
Robin-Rounthwaite
closed
2 years ago
2
Can this be used on nanopure data?
#60
raw937
opened
2 years ago
1
Unoptimal consensus
#59
Dmitry-Antipov
closed
3 years ago
2
spoa: make errors
#58
xinxin416
opened
3 years ago
1
Fails with the latest cereal: ld: error: unable to find library -lcereal
#57
yurivict
opened
3 years ago
2
4.0.5 build -DBUILD_SHARED_LIBS=ON : CMakeFiles/spoa.dir/build.make:144: *** missing separator. Stop.
#56
mr-c
closed
3 years ago
9
upgrade to SIMDe v0.7.0
#55
mr-c
closed
3 years ago
1
Build fails on ppc64le
#54
gururajrkatti
closed
3 years ago
6
Inconsistent output directory of libspoa.a
#53
rlorigro
closed
3 years ago
3
Install error: ‘Alignment’ has not been declared
#52
shaohaojing
closed
3 years ago
3
How to get both GFA and MSA as output?
#51
AndreaGuarracino
closed
3 years ago
5
Issue when installing spoa
#50
stanislasmorand
closed
4 years ago
3
Spoa v4.0.0 doesn't work when input is FASTA
#49
wwliao
closed
4 years ago
2
Add cereal include
#48
cjw85
closed
4 years ago
4
Linking spoa as an ExternalProject in CMake
#47
rlorigro
closed
4 years ago
2
Using quality values from FastQ to generate consensus/graph
#46
ms-gx
closed
4 years ago
2
write GFA paths in reverse when alignment is reversed
#45
ekg
closed
4 years ago
6
Expose parts of the graph
#44
ekg
closed
4 years ago
3
Expose alignment score
#43
ekg
closed
4 years ago
1
optionally build the graph using reverse complemented alignments
#42
ekg
closed
4 years ago
4
Illegal instruction
#41
paoloczi
closed
4 years ago
2
make error
#40
zhenzhenyang-psu
closed
4 years ago
3
determining alignment score
#39
ekg
closed
3 years ago
5
Fix compiler error while generating shared library.
#38
bagashe
closed
4 years ago
0
Fix compiler error while generating shared library.
#37
bagashe
closed
4 years ago
2
write GFAv1 of POA graph
#36
ekg
closed
4 years ago
7
Unable to build shared library for v3.3.0 on Ubuntu 20.04 LTS with gcc v9.3.0
#35
bagashe
closed
4 years ago
26
[bioparser::FastqParser] error: invalid file format!
#34
ksahlin
closed
4 years ago
2
CPU dispatcher to different SIMD architectures
#33
mbrcic
closed
4 years ago
0
Output graph as GFA
#32
rvaser
closed
4 years ago
2
Try POA vs POA alignment
#31
rvaser
opened
4 years ago
3
Output MSA as FASTA
#30
rvaser
closed
4 years ago
3
Introduced SIMDe for portable SIMD
#29
mbrcic
closed
4 years ago
0
src/alignment_engine.cpp: support gcc-10
#28
emollier
closed
4 years ago
6
Fix getopt handling on architectures where char is unsigned
#27
AdrianBunk
closed
4 years ago
0
Conda installation not working
#26
MaestSi
closed
4 years ago
18
Added serialisation support using cereal
#25
bsipos
closed
4 years ago
4
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