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Hello,
It seems that the genotypic data of the intermidiate generations is essential for the analysis.
I'm interested in your program, however, I did not have any genotypic data of the intermidiat…
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Hi,
I have a question regarding the utilization of MSMC2 for inferring windows of equal recombination rates along the genome.
My query pertains to the feasibility of using MSMC2 to infer segments …
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Hello,
I ran phASER for multiple samples and extracted allele specific expression for each sample independently.
Seen that these samples are split into case/control, I would like to process these …
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Hello,
I ran _interval_ on 2000 SNPs of a region about 300 Kb. I have 10 diploid individuals. I ran interval with block penalty of 5, 10 million iterations and sampled every 2000 steps. I use a sub…
Homap updated
2 years ago
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Hi,
I would like to report on a typo in the plot_block function for the option "orientation"
> plot_block(parent.t.sliced_blocklist, orientation="front")
Error in plot_block(parent.t.sliced_bl…
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Hello @chhylp123
This is a very important piece of software.
Now I'm having some problems. I'm working in the plant direction and the material I'm using is a callus from some kind of woody pla…
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Dear developer,
I have some questions about Falcon and Falcon-Unzip.
1. In Falcon-Unzip, raw reads are mapped to Falcon's primary contigs to identify SNPs.
and, using SNP information, Falc…
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For below data example with two haplotypes, each with a different overlapping indel variant, that are represented in the unphased input vcf file as three variants (a one 1 bp deletion immediately foll…
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Hello,
I would like to ask what do you usually do when encountering this type of patterns in the scaffolds:
, with K=19 (the number of founders of the population), with…