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stschiff
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msmc2
GNU General Public License v3.0
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about RCCR value > 1
#62
cnxiaobo94
opened
4 months ago
2
How many samples should be used in the analysis
#61
enluo211
opened
7 months ago
5
Does bam file need to be deduplicated?
#60
enluo211
closed
7 months ago
2
Baumwelch iteration not working
#59
Meer9234
opened
1 year ago
2
Question about plotting RCCR result and -s option in cross population analysis
#58
hungweichen0327
opened
1 year ago
2
Question about input vcf in each population
#57
hungweichen0327
closed
1 year ago
2
Converting time boundaries into years
#56
rancilhac
opened
1 year ago
3
Windows of equal recombination along the genome
#55
Luker121
opened
1 year ago
1
strange result about the estimated cross-coalescence rate
#54
liuqi-C
opened
1 year ago
1
Haploid problem
#53
cfz1998
opened
1 year ago
3
using phased-vcf file as input for MSMC2
#52
Niloofar-Alaei
opened
1 year ago
2
2 vs. 4 haplotype results
#51
dmartche
opened
1 year ago
2
Question about phasing and the cross-coalescence rate
#50
luisamarins
opened
1 year ago
1
Population selections
#49
cnxiaobo94
opened
1 year ago
5
installation error
#48
cnxiaobo94
opened
1 year ago
6
MSMC2 -I Range violation
#47
bxZhang996
opened
1 year ago
6
msmc2 install failed
#46
jayramr
closed
1 year ago
15
conda package for msmc2
#45
jayramr
closed
1 year ago
1
Cross-coalescence rate in multiple populations
#44
JohnsonStev
closed
1 year ago
1
Unable to run msmc2 on a single sample
#43
Buffan3369
closed
1 year ago
4
Out of memory issue with Cross Coalescent and weird RCC graph
#42
DuttaAnik
closed
2 years ago
0
wrong version displayed
#41
EricDeveaud
closed
1 year ago
2
msmc2 installation problem
#40
5681
closed
1 year ago
3
Problem running msmc2 with more than one scaffold
#39
micadiz
closed
2 years ago
2
Cross-coalescence rate query
#38
shaferab
closed
2 years ago
10
Phase without reference panel
#37
mbrieuc
closed
2 years ago
1
Running MSMC2 on multiple unphased genomes gives Unexpected '-' when converting from type string to type ulong
#36
athenalql
closed
3 years ago
1
Unexpected '.' when converting from type char[] to type ulong
#35
timmci
closed
2 years ago
6
minimum covergae for running MSMC2
#34
AliceIob
closed
3 years ago
1
Problems when install the msmc2
#33
7melo7
closed
1 year ago
5
confusion with running cross-population annalysis
#32
Aannaw
closed
2 years ago
1
number haplotypes
#31
kmanoharan01
closed
3 years ago
2
Ne explodes close to the present
#30
evo-eco-gen
closed
3 years ago
8
MSMC2: Cross Coalescent divergence time
#29
kmanoharan01
closed
3 years ago
12
Number of populations
#28
kmanoharan01
closed
3 years ago
2
msmc
#27
cfhj
closed
3 years ago
1
issues with scaffold-level data
#26
selasphoruskershaw
closed
3 years ago
0
msmc-input
#25
cfz1998
closed
3 years ago
1
Odd relative cross-coalescence rate for simulated data
#24
marqueda
closed
4 years ago
3
Affect of rho/mu ratio in reconstructing histories
#23
fredericlabbe
closed
3 years ago
1
The abonormal values of RCCR when estimating the population splits with MSMC2
#22
Yun-HongWu
closed
5 years ago
1
error msmc2 :estimating population separation history
#21
ncnlll
closed
4 years ago
6
Decode output issue
#20
marqueda
closed
3 years ago
10
range violation error when providing multiple input files
#19
KHanghoj
closed
5 years ago
1
Tutorial: unrecognized option
#18
pstokespmb
closed
5 years ago
1
Tutorial: output looks different
#17
pstokespmb
closed
4 years ago
3
The much higher Ne results generated by MSMC2 than that in PSMC
#16
yongzhiyang2012
closed
5 years ago
2
msmc2 -I 4,5,6,7 error
#15
SC-Duan
closed
5 years ago
7
multi threads
#14
laurabuggiotti
closed
5 years ago
3
number of haplotypes
#13
laurabuggiotti
closed
6 years ago
5
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