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Hi,
Thank you for a great resource for CAZyme annotation and substrate prediction. I was wondering since the annotation is trained on human gut microbiome (GMGC), would you recommend running it on …
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"format", "format_url", "type":, "generated_by", "date", "id"s within rows/columns, "matrix_type", etc are all wrapped in lists (`[]`), whereas the specification states these should be `string`s: http…
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Being able to blow off the lower jaw of humans would be pretty nice. Possibly gut physics of brains or organs hanging out and sorta dangling with dynamic chunks. # @
EDIT: Forgot to tag it with fe…
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Can you please provide more information about the 206,581 IGG genomes that were clustered into into 23,790 representative genomes?
I understand that it includes samples from the HGM, PATRIC and IMG d…
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Goodman, A. L.
Kallstrom, G.
Faith, J. J.
Reyes, A.
Moore, A.
Dantas, G.
Gordon, J. I.
2011.
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mi…
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In light of reviewer 3's comments but only vaguely related, it would be a great addition to allow presets of "known" microbiomes to be simulated, i.e.
`iss generate --model miseq --preset human_gut…
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I think we omitted slot `size_frac` from the DH interfaces for soil samples. I also think I had been including them in the initial DH interfaces for all other environmental packages, but then it seems…
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GTDB-Tk was run using the following shell script:
`/storage1/data19/Gut_Microbiome_Clostridium_scindens/run_gtdbtk_segata.sh`
The command used to run GTDB-Tk in the shell script was:
`gtdbtk classify…
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### Submitter Name
Grace Pendlebury
### Submitter Affiliation
Shariant / Australian Genomics
### Submitter Github Handle
_No response_
### Additional Submitter Details
Shariant is…