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Clostridium_scindens_mining
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Identification of Bai Proteins in Clostridium scindens genomes
#21
breister2
opened
1 year ago
1
Transcribe genome sequences
#20
breister2
opened
1 year ago
0
Create trusted cutoffs for Bai HMM profiles
#19
breister2
opened
1 year ago
0
Making HMMs for Bai Protein Sequences
#18
breister2
opened
1 year ago
0
Run GTDB-Tk on the Gounot et al. 2022 genomes
#17
breister2
opened
1 year ago
1
Run GTDB-Tk on the 2914 Lemos et al. 2022 genomes
#16
breister2
opened
1 year ago
1
Download genomes from Lemos et al. 2022
#15
breister2
opened
1 year ago
0
Download genomes from Gounot et al 2022
#14
breister2
opened
1 year ago
0
Run dRep on the 224 C. scindens genomes
#13
breister2
opened
1 year ago
3
Run CheckM on the 200 C. scindens genomes that were identified
#12
breister2
opened
1 year ago
0
Run GTDB-Tk on 121 UHGG Genomes to confirm classification as C. scindens
#11
breister2
opened
1 year ago
1
Run GTDB-Tk on the 150,000 Segata genomes to identify potential C. scindens genomes
#10
breister2
opened
1 year ago
1
Run GTDB-Tk on 31 Reference Clostridium scindens genomes from NCBI
#9
breister2
opened
1 year ago
0
Extract 16S sequences from the 31 reference Clostridium scindens genomes
#8
breister2
opened
1 year ago
0
Download the 150,000 genomes from the Segata lab
#7
breister2
opened
1 year ago
0
Run GTDB-Tk on 1300 genomes from the Tamburini dataset
#6
breister2
opened
1 year ago
0
Run GTDB-Tk on the 32,000 Zeng genomes
#5
breister2
opened
1 year ago
1
Download GFF files of the 120 UHGG C. scindens genomes
#4
breister2
opened
1 year ago
1
Run Blast on each genome from the Tamburini dataset using the 31 reference genomes 16S sequences as the blast database
#3
breister2
opened
1 year ago
0
Run Blast on each genome from the Merrill dataset using the 31 reference genomes 16S sequences as the blast database
#2
breister2
opened
1 year ago
0
Run Blast on each genome from the Wilkinson dataset using the 31 reference genomes 16S sequences as the blast database
#1
breister2
opened
1 year ago
0