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Raja's email
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Is this usecase supported?
I am a user with several glycosylation sites in different proteins that I identified and have published :) and now I want to share my list with GlyGe…
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I am trying to use the beta functions
![image](https://github.com/smith-chem-wisc/Spritz/assets/21457/a4c3de3b-a926-4a0d-99c1-083b305ddcab)
but facing this error (log below), any ideas how to pr…
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Hi,
I tried your pipeline with default parameters with long reads data (pacbio hq isoforms mapped with gmap) and NGS reads. A lot of my isoseq transcripts/isoforms (exons) were filtered out. See th…
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Hi,
I am wondering, are the transcripts expression values in the `CCLE_hs.RData` file quantified in log2(FPKM+1)?
There are values that seem more like count ...
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HI, i am new here..
I followed tutorial and I wrote my pipeline below.
1. Assemble with Trinity tool
2. estimate abundance and normalize with RSEM
and with isoform matrix, I run DEG analysis…
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Trying to use UNAGI to study gene expression in the hamster lung after viral infection. We get the following after the script moves to finding splicing isoforms. Right now we are just running on a lim…
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If we submit the mutations (all in HIST1H2BN) below for anntoation, the last one was returned on a different isoform. Is it because the mutation is in UTR and therefore a missense mutation in another …
jjgao updated
5 years ago
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Is there a way to prompt MM to report multiple protein link sites in the xl search output? When a peptide is present in two isoforms or in the rare event - present in two unrelated proteins - the prot…
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Hi,
When I run 10 samples separately, the percentage of novel isoforms with CAGE support are like 50% in each samples.
But, I want to generate one GTF file. So, I run 10 samples together. The resul…
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I have no idea why all isoforms of a gene are appearing twice (see attached pic). While on biodalliance.org it is correct. I cloned the latest version of Dalliance. Any hint? Thanks.