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Hello
When i use the this command :"python mbcclr --resume
-r nanoflit.fasta -o test_output -e umap -c 613187 -k 5 -t 100" , and the finnal.txt just can find one Bin-1. I am not sure that some…
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Dear Developer,
I am using SPADES 3.10 for 50X illumina and 10X pacbio assembly. The genome size is 6G and my RAM is 1T.
My command line is:
spades.py --careful -t 24 -m 980 --dataset dataset.yaml…
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I download the transcriptome fasta from uscs, https://hgdownload.cse.ucsc.edu/goldenpath/mm9/bigZips/mrna.fa.gz . when I used kallisto index to bulid the index for kallisto, that had two warning:
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Hello! Thanks for your helpful tool!
I am trying to assemble long-read sequencing data with short-read polishing. My long read data (nanopore direct RNA sequencing) are from the animals under 25 de…
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Hello,
I am getting an error while indexing of the BAM files. I have installed the tool using conda. So the kallisto version is at 0.44 as mentioned. Below is STDOUT
```
Results stored in: stra…
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Hi,
I do not see any output files. It looks like it ran but in the end it says "killed"......
```
./ProSampler.unix -i /home/premsubramaniam/Desktop/TFEA_output/LNCAP_WT01_peaks.fasta -o out_
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so I just found out about this neat in-development [Kmers.jl](https://github.com/BioJulia/Kmers.jl) package. It has this Kmer type, a very intricate type ecosystem, and fancy functions.
I did a mic…
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Hello,
I want to use alfpy to count k-mers and calculate the Canberra distance for clustering proteomes of multiple species.
The input is usually >500K protein sequences, so I want to be able to…
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Hi guys,
I've run into an issue running SPAdes in metagenomic mode. Filtering singleton k-mers of the forward reads takes only a few minutes, but then SPAdes gets stuck on the reverse reads file fo…
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I have put a small example on [this gist].(https://gist.github.com/winni2k/64efa2e354a70a72d8a70a5ac373cc49)
When I run `run.sh`, I get the following output:
```bash
0 reads pseudoalign
[build…