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how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
MIT License
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Can't find any of the first 10 BED transcript_ids in fasta file
#22
eggrandio
opened
1 month ago
0
No output
#21
ducphuc2000
opened
3 months ago
1
Getting Error while indexing BAM file
#20
sanyalab
opened
7 months ago
3
installation problem regarding glibc
#19
sofiapuvogelvittini
opened
1 year ago
0
Ensembl GRCm39 v109 GTF / ...cds.all.fa Parse Issue
#18
MikeWLloyd
opened
1 year ago
0
Tried to run on single strand mode, not working
#17
ryanpe13002
opened
1 year ago
2
Containers...
#16
BarryDigby
opened
2 years ago
0
fix compatibility issue with newline separator
#15
ftschirpke
opened
2 years ago
2
not working with pyhton 3.9
#14
robenimmersatt
opened
2 years ago
3
Error: kallisto index file not found kallisto_index
#13
wbvguo
opened
2 years ago
4
Anyone successfully get this library to work?
#12
dshinzie
closed
2 years ago
6
this software cannot be used for the single-end RNA-seq data
#11
jingydz
opened
2 years ago
2
ValueError: Specified \n as separator or delimiter.
#10
manivenkatesan
closed
2 years ago
4
NameError when converting gtf to bed
#9
sarah872
closed
2 years ago
1
Can't find transcript ids from fasta in bed
#8
XMTian
opened
2 years ago
4
newline characters in Fasta header cause mismatch
#7
wowwish
closed
2 years ago
2
check_strandedness error with how_are_we_stranded_here
#6
venkan
closed
3 years ago
8
how_are_we_stranded_here does not work with kallisto version greater than kallisto-0.44.0
#5
smk5g5
opened
4 years ago
2
pandas is missing from the requirement.txt
#4
wckdouglas
closed
4 years ago
1
Add a check on if the fastq is gzipped or now
#3
aleighbrown
closed
4 years ago
0
Total 0 usable reads were sampled
#2
aleighbrown
closed
4 years ago
2
Installation with pip doesn't seem to quite work
#1
aleighbrown
closed
4 years ago
1