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- [ ] Look into Zipfile and Petastorm
- [ ] Display PCA of baseline and Effnet data
- [ ] Normalize over positive controls
- [ ] Plot batch effects for LINCS data (who has done that)
- [ ] integr…
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Currently in use across many projects
- https://github.com/Sage-Bionetworks/ampadknowledgeportal
- https://github.com/Sage-Bionetworks/PsychENCODE-DataRelease
- https://github.com/Sage-Bionetwork…
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Hello, when I am trying to download data from the GSE70138 dataset for the initial set-up phase, after unzipping, the data included in the [GSE70138_Broad_LINCS_cell_info_2017-04-28.txt] and [GSE70138…
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I am pasting @AdeboyeML's analysis performed in https://github.com/broadinstitute/lincs-profiling-comparison/issues/2#issuecomment-729394257 so that we can continue a targeted discussion in a clean gi…
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Hi,
Thanks for all the work on this tool. I am having trouble getting results for DrugScore function. I tried a few other tissue types including breast, kidney, lymphatic tissue and they seemed als…
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see results from [query](https://rs.stage.lincsproject.ca/resource/:ThinkingFrames?view=search-orlando&semanticSearch=N4IgziBcoCYPZXAazmSBhOA7AxgUwAcAXEAGhBygG1QAnPKOgQ0R1oFtIBRAVh4H0AKgE8CDcvUQAeABZE…
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@shntnu @niranjchandrasekaran @gwaygenomics
Here is my first version of an analysis of the LINCS data. Please read and give ideas for improvement.
https://github.com/broadinstitute/neural-profil…
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Biomarker App to be put into front end
Evaluate how intensive this effort will be and determine how much effort will go into this by sean and sujeet
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Tested with LGBM (note the DEBUG is default):
```(lgbm_py37) ac.sejones@lambda1:~/test_improve_library/LGBM$ python lgbm_train_improve.py
DEBUG Config 2024-08-21 09:26:08,500: Setting output …
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Hi,
Thanks for all the work on this tool. I am having trouble getting results for the blood tissue (I did loaded the specific tissue related drugs). I tried a few other tissue types including breas…