broadinstitute lincs-profiling-complementarity issues

broadinstitute / lincs-profiling-complementarity

Analyzing and comparing signal found in different profiling technologies

BSD 3-Clause "New" or "Revised" License

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issues

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Can not file images on https://idr.openmicroscopy.org with idr0125

#80 shihanyu opened 1 year ago
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Adding pdf of full figure 1

#79 gwaybio closed 2 years ago
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Save correct table for deep learning precision

#78 gwaybio closed 2 years ago
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Adding `All*` to Fig S17

#77 gwaybio closed 2 years ago
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Adding full figure + update repo

#76 gwaybio closed 2 years ago
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[Response to Reviewers] Update all figure names

#75 gwaybio closed 2 years ago
0
[Response to Review] Update Figure 5 (Deep learning analysis)

#74 gwaybio closed 2 years ago
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[Response to Reviewers] Update Figure 4F - ORA GO term display

#73 gwaybio closed 2 years ago
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[Response to Review] Equal weighting ensemble

#72 gwaybio closed 2 years ago
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Do not track all csv files via git lfs

#71 gwaybio closed 2 years ago
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[Response to Reviewers] Update supplementary tables

#70 gwaybio closed 2 years ago
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[Response to Review] Adding MOA matching column to figure 2 with same compounds

#69 gwaybio closed 2 years ago
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[Response to Review] Add dose-independent percent matching and average precision experiments

#68 gwaybio closed 2 years ago
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[Response to Review] Filter GO terms for ML analysis

#67 gwaybio closed 2 years ago
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[Response to Review] Update figures to clarify Spearman and add percent replicating explainer

#66 gwaybio closed 2 years ago
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[Response to Review] Edge well filter QC percent strong

#65 gwaybio closed 2 years ago
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[Response to Review] Adding visualization of MOAs that are not captured by either assay

#64 gwaybio closed 2 years ago
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[Response to Review] Comparing cell count, reproducibility, and cell death predictions

#63 gwaybio closed 2 years ago
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[Response to Review] Adding precision analysis for MOAs and Targets

#62 gwaybio closed 2 years ago
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[Response to Review] Update MOA labels in UMAP visualization

#61 gwaybio closed 2 years ago
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Expanded prediction analysis

#60 gwaybio opened 2 years ago
3
[Response to Review] Add target and pathway labels for prediction

#59 gwaybio closed 2 years ago
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[Response to Review] Adding example distributions: Cell Painting Images and L1000

#58 gwaybio closed 2 years ago
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[Response to Review] Discretize panels in figure 1 and sup fig 3

#57 gwaybio closed 2 years ago
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[Response to Review] Adding dose independent null distribution comparisons

#56 gwaybio closed 2 years ago
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[Response to Review] Coefficient of variation supplementary figure

#55 gwaybio closed 2 years ago
1
[Response to Review] Add PCA supplementary figure

#54 gwaybio closed 2 years ago
0
scikit-learn package version

#53 yhan8 opened 2 years ago
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MOA predictions figure tweaking

#52 gwaybio closed 3 years ago
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Update figures in response to internal comments and add supplementary table 1

#51 gwaybio closed 3 years ago
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Remove bortezomib from analysis

#50 gwaybio opened 3 years ago
2
Sync performance metrics after subsampling analysis

#49 gwaybio closed 3 years ago
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Adjust calculating percent matching

#48 gwaybio closed 3 years ago
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update fig 5 and add sup fig 10

#47 gwaybio closed 3 years ago
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Finalize MOA models

#46 gwaybio closed 3 years ago
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Update subsampling procedure

#45 gwaybio closed 3 years ago
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Adding analysis to calculate percent replicating with well-controlled null distribution

#44 gwaybio closed 3 years ago
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Modernize figures (update names)

#43 gwaybio closed 3 years ago
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Adding data in preparation for final MOA prediction

#42 gwaybio closed 3 years ago
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Misc edits to data exploration

#41 gwaybio closed 3 years ago
0
Future work

#40 shntnu opened 3 years ago
2
Update README.md

#39 shntnu closed 3 years ago
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Updating heatmap colors

#38 gwaybio closed 3 years ago
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Rerun MOA prediction including subsampled CP data

#37 gwaybio closed 3 years ago
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Rerun clustering pipeline and generate sup fig 7

#36 gwaybio closed 3 years ago
0
Adding plate position analysis and figures

#35 gwaybio closed 3 years ago
2
Update consensus analysis for spherized consensus profiles

#34 gwaybio closed 3 years ago
0
Adding supplementary figure 6

#33 gwaybio closed 3 years ago
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Adding supplementary figure 5 - UMAP by dose and TSNE

#32 gwaybio closed 3 years ago
0
Reorgnaize figure 1 and 2

#31 gwaybio closed 3 years ago
1