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broadinstitute
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lincs-profiling-complementarity
Analyzing and comparing signal found in different profiling technologies
BSD 3-Clause "New" or "Revised" License
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Can not file images on https://idr.openmicroscopy.org with idr0125
#80
shihanyu
opened
8 months ago
0
Adding pdf of full figure 1
#79
gwaybio
closed
1 year ago
0
Save correct table for deep learning precision
#78
gwaybio
closed
1 year ago
0
Adding `All*` to Fig S17
#77
gwaybio
closed
2 years ago
0
Adding full figure + update repo
#76
gwaybio
closed
2 years ago
0
[Response to Reviewers] Update all figure names
#75
gwaybio
closed
2 years ago
0
[Response to Review] Update Figure 5 (Deep learning analysis)
#74
gwaybio
closed
2 years ago
0
[Response to Reviewers] Update Figure 4F - ORA GO term display
#73
gwaybio
closed
2 years ago
0
[Response to Review] Equal weighting ensemble
#72
gwaybio
closed
2 years ago
0
Do not track all csv files via git lfs
#71
gwaybio
closed
2 years ago
0
[Response to Reviewers] Update supplementary tables
#70
gwaybio
closed
2 years ago
0
[Response to Review] Adding MOA matching column to figure 2 with same compounds
#69
gwaybio
closed
2 years ago
0
[Response to Review] Add dose-independent percent matching and average precision experiments
#68
gwaybio
closed
2 years ago
0
[Response to Review] Filter GO terms for ML analysis
#67
gwaybio
closed
2 years ago
0
[Response to Review] Update figures to clarify Spearman and add percent replicating explainer
#66
gwaybio
closed
2 years ago
0
[Response to Review] Edge well filter QC percent strong
#65
gwaybio
closed
2 years ago
0
[Response to Review] Adding visualization of MOAs that are not captured by either assay
#64
gwaybio
closed
2 years ago
0
[Response to Review] Comparing cell count, reproducibility, and cell death predictions
#63
gwaybio
closed
2 years ago
0
[Response to Review] Adding precision analysis for MOAs and Targets
#62
gwaybio
closed
2 years ago
0
[Response to Review] Update MOA labels in UMAP visualization
#61
gwaybio
closed
2 years ago
0
Expanded prediction analysis
#60
gwaybio
opened
2 years ago
3
[Response to Review] Add target and pathway labels for prediction
#59
gwaybio
closed
2 years ago
0
[Response to Review] Adding example distributions: Cell Painting Images and L1000
#58
gwaybio
closed
2 years ago
0
[Response to Review] Discretize panels in figure 1 and sup fig 3
#57
gwaybio
closed
2 years ago
0
[Response to Review] Adding dose independent null distribution comparisons
#56
gwaybio
closed
2 years ago
0
[Response to Review] Coefficient of variation supplementary figure
#55
gwaybio
closed
2 years ago
1
[Response to Review] Add PCA supplementary figure
#54
gwaybio
closed
2 years ago
0
scikit-learn package version
#53
yhan8
opened
2 years ago
0
MOA predictions figure tweaking
#52
gwaybio
closed
2 years ago
0
Update figures in response to internal comments and add supplementary table 1
#51
gwaybio
closed
2 years ago
0
Remove bortezomib from analysis
#50
gwaybio
opened
2 years ago
2
Sync performance metrics after subsampling analysis
#49
gwaybio
closed
2 years ago
0
Adjust calculating percent matching
#48
gwaybio
closed
2 years ago
0
update fig 5 and add sup fig 10
#47
gwaybio
closed
2 years ago
0
Finalize MOA models
#46
gwaybio
closed
2 years ago
0
Update subsampling procedure
#45
gwaybio
closed
2 years ago
0
Adding analysis to calculate percent replicating with well-controlled null distribution
#44
gwaybio
closed
2 years ago
0
Modernize figures (update names)
#43
gwaybio
closed
2 years ago
0
Adding data in preparation for final MOA prediction
#42
gwaybio
closed
2 years ago
0
Misc edits to data exploration
#41
gwaybio
closed
2 years ago
0
Future work
#40
shntnu
opened
2 years ago
2
Update README.md
#39
shntnu
closed
2 years ago
0
Updating heatmap colors
#38
gwaybio
closed
2 years ago
0
Rerun MOA prediction including subsampled CP data
#37
gwaybio
closed
2 years ago
0
Rerun clustering pipeline and generate sup fig 7
#36
gwaybio
closed
2 years ago
0
Adding plate position analysis and figures
#35
gwaybio
closed
2 years ago
2
Update consensus analysis for spherized consensus profiles
#34
gwaybio
closed
2 years ago
0
Adding supplementary figure 6
#33
gwaybio
closed
2 years ago
0
Adding supplementary figure 5 - UMAP by dose and TSNE
#32
gwaybio
closed
2 years ago
0
Reorgnaize figure 1 and 2
#31
gwaybio
closed
2 years ago
1
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