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Hello @danielsf,
Thank you for putting together this wonderful tool. For our analysis workflow, we would like to be able to create region specific reference based on the ABC WMB taxonomy. I follo…
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Hi, thanks for your excellent tool!
I am wondering about the choice of plink. Should I use the same chr in step1 and step2&3 or just randomly choose in step1? Because I noticed that step1 used chr1 p…
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- download a data of choice from 10x genomics with `sc.datasets_visium_sge()` (you can browse them [here](https://support.10xgenomics.com/spatial-gene-expression/datasets))
- run the scanpy tutorial,…
giovp updated
3 years ago
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Hello,
`diffxpy` has been recommended as being a go to for performing differential gene expression analysis in the `scanpy` project. However, the documentation for intention of use is lacking. For in…
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Thanks for sharing this dataset. I would like to ask for the data from cellxgene, is the batch correction applied for both the **low-dimensional reduction embedding** (e.g. UMAP) and the **expression …
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Sorry, the previous question is closed too soon. So I open a new issue regarding it.
I actually choose some very reasonable marker genes to start. Those are the genes I got from Seurat analysis. B…
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Hi
I am using monocle for differential gene expression analysis of single cells. I am trying to compare the expression of genes of a cell subpopulation (a cluster in tSNE plot for example) for two di…
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This is a guide for how to test the sites following the [React 18 upgrade](https://github.com/VEuPathDB/web-monorepo/pull/1100) for the client code.
For checking if a bug was already on the live/pr…
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Hi,
I used SEURAT to identify conserved markers and it uses meta-analysis methods from the MetaDE R package, so I suppose this is a question about MetaDE. **Some of the genes' logFC turned out to be …
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There is a profile where the user has used a different coordinate system in their paper and gEAR dataset (SWNE instead of tsne /UMAP). In the single cell workbench, it has a primary analysis available…