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I have obtained bins with a gene-based binning, these genes are generally short (
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I want to extract euk genes/proteins from metagenomics data. I want to build a gene/protein catalog for euk genes.
Seems that metaeuk is a reference guided approach ( based on mmseq2) and Plass is a …
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hi,professor:
I read your paper with the name of A high-quality genome compendium of the human gut microbiome of Inner Mongolians, and I learned a lot from it about some analysis methods.
Now I w…
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Sorry for bringing this up very late, and we may have discussed this during the writing, but now that I'm in the process of submitting metabarcoding data, it becomes obvious that a field specifying se…
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Hi, I have metagenomic data (paired-end, 150 bp per reads, two ~7 Gb fastq files for one sample) of 114 samples. These samples come from surface water of a river from four seasons. I want to finally g…
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Still needs work, esp around talking about what sourmash is actually doing. But first pass!
Charcoal identifies and removes contamination in metagenome-assembled genomes using k-mer based methods.
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I like to combine different metagenome-assembled genomes (contigs) into one.
I tried to use miniasmwith:
```
cat all_genomes/*.fasta > x.fasta
minimap2 -x asm10 -t4 x.fasta x.fasta | gzip -…
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I'am very interest in the microtrait R package because the reviewers required me to calculate microbial adaptation traits based on metagenome assembled genomes. Because this package integrated many bi…
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Hell Dashing2 developer,
Dashing can be use for genome derelication in nt format but I am wondering wither it is an option to have it also work for amino acid sequences (all gene of a genome in ami…
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- **Patric database** was found from
Guglielmini, J., Bourhy, P., Schiettekatte, O., Zinini, F., Brisse, S., & Picardeau, M. (2019). Genus-wide Leptospira core genome multilocus sequence typing for …